Gene detail information of Glyur001104s00026666.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25440.18.00E-110zinc finger WD40 repeat protein 1
NRXP_004510889.10PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum]
COGYP_007058985.11.00E-18WD40 repeat-containing protein [Rivularia sp. PCC 7116]
Swissprottr|Q9FNZ2|C3H48_ARATH2.00E-147Zinc finger CCCH domain-containing protein 48
trEMBLtr|I1MB97|I1MB97_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37100.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011047183375075-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001104s00026666.1PF00400.27WD401672020.00015
Glyur001104s00026666.1PF00400.27WD402893251.10E-07
Glyur001104s00026666.1PF00400.27WD403303641.70E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.877
SRR1783600control10.922
SRR1783602moderate drought stress12.537
SRR1811619moderate drought stress12.554

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.307
DRR006520Root Summer glycyrrhizin high producing strain11.743
DRR006521Root Winter glycyrrhizin high producing strain14.887
DRR006522Root Winter glycyrrhizin high producing strain13.360
DRR006523Root Summer glycyrrhizin low producing strain11.413
DRR006524Root Summer glycyrrhizin low producing strain11.959
DRR006525Leaf Summer glycyrrhizin high producing strain6.390
DRR006526Leaf Summer glycyrrhizin high producing strain6.537

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.749
SRR2868004Drought Stress(Tissue:root)13.932
SRR2967015Control (Tissue:root)11.236

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.259
SRR9715740Leave6.798
SRR9715741Leave8.418
SRR9715739Root9.657
SRR9715742Root10.007
SRR9715743Root9.234

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.879
SRR8749028MeJA induced 9h8.551
SRR8749029MeJA induced 9h6.101
SRR8749030Uninduced6.919
SRR8749031Uninduced8.514
SRR8749032Uninduced9.531

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.531
SRR8400027Control-Root13.466

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved