Gene detail information of Glyur001105s00029438.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G16700.13.00E-100Alpha-helical ferredoxin
NRXP_003636199.12.90E-156NADH-quinone oxidoreductase subunit I [Medicago truncatula]
COGYP_003550476.15.00E-91NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum marinum IMCC1322]
Swissprottr|P80269|NDUS8_SOLTU2.00E-138NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (Precursor)
trEMBLtr|G7ZVU9|G7ZVU9_MEDTR1.00E-156Uncharacterized protein {ECO:0000313|EMBL:AFK45741.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011053971044175-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03941NDUFS8 EC:1.6.5.3 1.6.99.3 Oxidative phosphorylation map00190
Alzheimer's diseasemap05010
Parkinson's diseasemap05012
Huntington's diseasemap05016
Non-alcoholic fatty liver disease (NAFLD)map04932


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016651  oxidoreductase activity, acting on NAD(P)H

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001105s00029438.2PF12838.2Fer4_71381922.80E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.073
SRR1783600control55.866
SRR1783602moderate drought stress56.376
SRR1811619moderate drought stress59.689

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain72.430
DRR006520Root Summer glycyrrhizin high producing strain69.174
DRR006521Root Winter glycyrrhizin high producing strain69.146
DRR006522Root Winter glycyrrhizin high producing strain66.953
DRR006523Root Summer glycyrrhizin low producing strain65.634
DRR006524Root Summer glycyrrhizin low producing strain57.402
DRR006525Leaf Summer glycyrrhizin high producing strain49.053
DRR006526Leaf Summer glycyrrhizin high producing strain50.985

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)95.228
SRR2868004Drought Stress(Tissue:root)90.883
SRR2967015Control (Tissue:root)85.085

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.573
SRR9715740Leave69.577
SRR9715741Leave63.795
SRR9715739Root22.693
SRR9715742Root42.906
SRR9715743Root36.991

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h141.413
SRR8749028MeJA induced 9h104.130
SRR8749029MeJA induced 9h143.752
SRR8749030Uninduced111.338
SRR8749031Uninduced94.547
SRR8749032Uninduced65.579

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root75.648
SRR8400027Control-Root77.892

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved