Gene detail information of Glyur001106s00033797.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58580.10DNAse I-like superfamily protein
NRXP_003533908.10PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Glycine max]
COGYP_005369360.11.00E-09hypothetical protein COCOR_03385 [Corallococcus coralloides DSM 2259]
Swissprottr|Q9M2F8|CCR4B_ARATH0Carbon catabolite repressor protein 4 homolog 2
trEMBLtr|I1L2J3|I1L2J3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G15980.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011063424541170-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12603CNOT6, CCR4 EC:3.1.13.4 RNA degradation map03018


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001106s00033797.1PF03372.18Exo_endo_phos2545852.20E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.414
SRR1783600control31.585
SRR1783602moderate drought stress28.485
SRR1811619moderate drought stress28.196

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.541
DRR006520Root Summer glycyrrhizin high producing strain27.176
DRR006521Root Winter glycyrrhizin high producing strain38.772
DRR006522Root Winter glycyrrhizin high producing strain38.070
DRR006523Root Summer glycyrrhizin low producing strain31.859
DRR006524Root Summer glycyrrhizin low producing strain30.742
DRR006525Leaf Summer glycyrrhizin high producing strain32.403
DRR006526Leaf Summer glycyrrhizin high producing strain31.437

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.709
SRR2868004Drought Stress(Tissue:root)34.692
SRR2967015Control (Tissue:root)36.284

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.263
SRR9715740Leave30.694
SRR9715741Leave30.232
SRR9715739Root19.325
SRR9715742Root29.509
SRR9715743Root27.891

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.770
SRR8749028MeJA induced 9h35.280
SRR8749029MeJA induced 9h28.168
SRR8749030Uninduced22.890
SRR8749031Uninduced19.791
SRR8749032Uninduced22.809

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.240
SRR8400027Control-Root31.660

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved