Gene detail information of Glyur001108s00026748.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29750.20receptor-like kinase in flowers 1
NRXP_007147980.10hypothetical protein PHAVU_006G170500g [Phaseolus vulgaris]
COGYP_004775215.12.00E-22RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprottr|Q9FXF2|RKF1_ARATH0Probable LRR receptor-like serine/threonine-protein kinase RFK1 (Precursor)
trEMBLtr|V7BPS2|V7BPS2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19974.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01108648014553-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.7.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001108s00026748.1PF00560.28LRR_12762970.28
Glyur001108s00026748.1PF11721.3Malectin3555435.10E-48
Glyur001108s00026748.1PF07714.12Pkinase_Tyr6236891.10E-09
Glyur001108s00026748.1PF07714.12Pkinase_Tyr6927951.00E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.023
SRR1783600control2.962
SRR1783602moderate drought stress6.368
SRR1811619moderate drought stress6.506

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.519
DRR006520Root Summer glycyrrhizin high producing strain15.836
DRR006521Root Winter glycyrrhizin high producing strain16.312
DRR006522Root Winter glycyrrhizin high producing strain15.401
DRR006523Root Summer glycyrrhizin low producing strain17.437
DRR006524Root Summer glycyrrhizin low producing strain17.130
DRR006525Leaf Summer glycyrrhizin high producing strain2.782
DRR006526Leaf Summer glycyrrhizin high producing strain2.782

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)20.618
SRR2868004Drought Stress(Tissue:root)24.926
SRR2967015Control (Tissue:root)28.108

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.732
SRR9715740Leave1.037
SRR9715741Leave1.044
SRR9715739Root0.467
SRR9715742Root2.598
SRR9715743Root2.460

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.236
SRR8749028MeJA induced 9h13.848
SRR8749029MeJA induced 9h3.729
SRR8749030Uninduced21.870
SRR8749031Uninduced11.577
SRR8749032Uninduced4.383

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.874
SRR8400027Control-Root3.141

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved