Gene detail information of Glyur001108s00026749.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23540.1 | 5.00E-159 | Mov34/MPN/PAD-1 family protein |
| NR | XP_003542979.1 | 0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Glycine max] |
| COG | YP_008797954.1 | 5.00E-17 | 26S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|Q9LT08|PSDE_ARATH | 0 | 26S proteasome non-ATPase regulatory subunit 14 homolog |
| trEMBL | tr|I1M1N6|I1M1N6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 16972 | 19952 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026749.1 | PF01398.16 | JAB | 27 | 138 | 1.20E-34 |
| Glyur001108s00026749.1 | PF13012.1 | MitMem_reg | 172 | 295 | 4.50E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.217 |
| SRR1783600 | control | 38.897 |
| SRR1783602 | moderate drought stress | 30.231 |
| SRR1811619 | moderate drought stress | 30.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 46.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.777 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.678 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.047 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.749 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.740 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 75.482 |
| SRR2868004 | Drought Stress(Tissue:root) | 63.340 |
| SRR2967015 | Control (Tissue:root) | 59.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 53.979 |
| SRR9715740 | Leave | 63.443 |
| SRR9715741 | Leave | 58.885 |
| SRR9715739 | Root | 17.912 |
| SRR9715742 | Root | 33.181 |
| SRR9715743 | Root | 27.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.932 |
| SRR8749028 | MeJA induced 9h | 58.966 |
| SRR8749029 | MeJA induced 9h | 59.647 |
| SRR8749030 | Uninduced | 51.641 |
| SRR8749031 | Uninduced | 30.593 |
| SRR8749032 | Uninduced | 37.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 54.794 |
| SRR8400027 | Control-Root | 54.441 |