Gene detail information of Glyur001108s00026754.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23540.2 | 5.00E-49 | Mov34/MPN/PAD-1 family protein |
| NR | XP_004517258.1 | 2.51E-58 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 14-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9LT08|PSDE_ARATH | 4.00E-57 | 26S proteasome non-ATPase regulatory subunit 14 homolog |
| trEMBL | tr|A0A096QBA4|A0A096QBA4_MAIZE | 4.00E-58 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G033626_P04} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01108 | 41871 | 44986 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH116 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001108s00026754.1 | PF04685.8 | DUF608 | 318 | 388 | 1.40E-08 |
| Glyur001108s00026754.1 | PF13012.1 | MitMem_reg | 416 | 503 | 9.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.104 |
| SRR1783600 | control | 6.769 |
| SRR1783602 | moderate drought stress | 4.126 |
| SRR1811619 | moderate drought stress | 3.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.259 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.833 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.312 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.682 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.086 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.292 |
| SRR2967015 | Control (Tissue:root) | 1.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.781 |
| SRR9715740 | Leave | 3.607 |
| SRR9715741 | Leave | 4.070 |
| SRR9715739 | Root | 1.323 |
| SRR9715742 | Root | 4.316 |
| SRR9715743 | Root | 3.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.515 |
| SRR8749028 | MeJA induced 9h | 1.959 |
| SRR8749029 | MeJA induced 9h | 2.493 |
| SRR8749030 | Uninduced | 2.029 |
| SRR8749031 | Uninduced | 1.083 |
| SRR8749032 | Uninduced | 0.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.481 |
| SRR8400027 | Control-Root | 7.451 |