Gene detail information of Glyur001108s00026762.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G01410.1 | 3.00E-152 | Aldolase-type TIM barrel family protein |
NR | XP_003542985.1 | 0 | PREDICTED: pyridoxal biosynthesis protein PDX1-like [Glycine max] |
COG | YP_002464232.1 | 2.00E-159 | pyridoxal biosynthesis lyase PdxS [Chloroflexus aggregans DSM 9485] |
Swissprot | tr|Q9FT25|PDX1_PHAVU | 0 | Pyridoxal biosynthesis protein PDX1 |
trEMBL | tr|I1M1P1|I1M1P1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29700.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold01108 | 80160 | 81089 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K06215 | pdxS, pdx1 | EC:4.3.3.6 | Vitamin B6 metabolism | map00750 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur001108s00026762.1 | PF01680.12 | SOR_SNZ | 22 | 228 | 7.50E-114 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 181.195 |
SRR1783600 | control | 181.749 |
SRR1783602 | moderate drought stress | 69.410 |
SRR1811619 | moderate drought stress | 69.201 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 103.803 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 102.970 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 172.747 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 166.320 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 83.749 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 85.067 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 421.367 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 476.854 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 144.148 |
SRR2868004 | Drought Stress(Tissue:root) | 86.547 |
SRR2967015 | Control (Tissue:root) | 64.491 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 443.872 |
SRR9715740 | Leave | 757.127 |
SRR9715741 | Leave | 294.285 |
SRR9715739 | Root | 276.129 |
SRR9715742 | Root | 360.056 |
SRR9715743 | Root | 338.221 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 125.444 |
SRR8749028 | MeJA induced 9h | 120.578 |
SRR8749029 | MeJA induced 9h | 135.154 |
SRR8749030 | Uninduced | 54.624 |
SRR8749031 | Uninduced | 24.607 |
SRR8749032 | Uninduced | 87.054 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 175.889 |
SRR8400027 | Control-Root | 159.369 |