Gene detail information of Glyur001109s00030194.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40490.15.00E-114Uroporphyrinogen decarboxylase
NRKHN31331.12.60E-170Uroporphyrinogen decarboxylase, chloroplastic [Glycine soja]
COGYP_007162110.18.00E-113uroporphyrinogen decarboxylase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q42967|DCUP_TOBAC3.00E-163Uroporphyrinogen decarboxylase, chloroplastic (Precursor)
trEMBLtr|C6TEE8|C6TEE8_SOYBN1.00E-170Uroporphyrinogen decarboxylase {ECO:0000256|RuleBase:RU000554}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011091225415434+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01599hemE, UROD EC:4.1.1.37 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0006779  porphyrin-containing compound biosynthetic process


molecular_function

GO:0004853  uroporphyrinogen decarboxylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001109s00030194.1PF01208.12URO-D12603.50E-82


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.144
SRR1783600control1.086
SRR1783602moderate drought stress1.354
SRR1811619moderate drought stress1.179

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.172
DRR006520Root Summer glycyrrhizin high producing strain2.134
DRR006521Root Winter glycyrrhizin high producing strain2.314
DRR006522Root Winter glycyrrhizin high producing strain2.366
DRR006523Root Summer glycyrrhizin low producing strain1.085
DRR006524Root Summer glycyrrhizin low producing strain0.778
DRR006525Leaf Summer glycyrrhizin high producing strain6.344
DRR006526Leaf Summer glycyrrhizin high producing strain6.364

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.320
SRR2868004Drought Stress(Tissue:root)9.553
SRR2967015Control (Tissue:root)10.014

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.533
SRR9715740Leave23.774
SRR9715741Leave20.715
SRR9715739Root0.718
SRR9715742Root1.364
SRR9715743Root0.720

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.464
SRR8749028MeJA induced 9h7.598
SRR8749029MeJA induced 9h8.538
SRR8749030Uninduced6.747
SRR8749031Uninduced3.207
SRR8749032Uninduced5.582

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.249
SRR8400027Control-Root10.776

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved