Gene detail information of Glyur001109s00030195.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G48220.13.00E-153Aldolase-type TIM barrel family protein
NRAFK47745.10unknown [Medicago truncatula]
COGYP_003886564.12.00E-113indole-3-glycerol-phosphate synthase [Cyanothece sp. PCC 7822]
Swissprottr|P49572|TRPC_ARATH2.00E-179Indole-3-glycerol phosphate synthase, chloroplastic (Precursor)
trEMBLtr|I3T5F3|I3T5F3_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK47745.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011091587519865-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01609trpC EC:4.1.1.48 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0006568  tryptophan metabolic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004425  indole-3-glycerol-phosphate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001109s00030195.1PF00218.16IGPS1213822.10E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control73.314
SRR1783600control74.335
SRR1783602moderate drought stress77.367
SRR1811619moderate drought stress76.621

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain86.679
DRR006520Root Summer glycyrrhizin high producing strain84.829
DRR006521Root Winter glycyrrhizin high producing strain71.762
DRR006522Root Winter glycyrrhizin high producing strain69.493
DRR006523Root Summer glycyrrhizin low producing strain83.994
DRR006524Root Summer glycyrrhizin low producing strain83.682
DRR006525Leaf Summer glycyrrhizin high producing strain74.768
DRR006526Leaf Summer glycyrrhizin high producing strain75.068

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)80.611
SRR2868004Drought Stress(Tissue:root)68.880
SRR2967015Control (Tissue:root)63.104

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave69.380
SRR9715740Leave85.782
SRR9715741Leave60.352
SRR9715739Root33.611
SRR9715742Root55.737
SRR9715743Root50.353

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h80.194
SRR8749028MeJA induced 9h72.693
SRR8749029MeJA induced 9h77.496
SRR8749030Uninduced69.169
SRR8749031Uninduced46.666
SRR8749032Uninduced50.223

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root89.270
SRR8400027Control-Root87.038

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved