Gene detail information of Glyur001109s00030207.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16780.1 | 3.00E-101 | Transducin family protein / WD-40 repeat family protein |
| NR | NP_001241978.1 | 0 | uncharacterized protein LOC100791834 [Glycine max] |
| COG | YP_007143594.1 | 7.00E-11 | peptidase C14 caspase catalytic subunit p20 [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|O22468|MSI2_ARATH | 6.00E-145 | WD-40 repeat-containing protein MSI2 |
| trEMBL | tr|C6TA07|C6TA07_SOYBN | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18659.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01109 | 83186 | 85948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001109s00030207.1 | PF12265.3 | CAF1C_H4-bd | 37 | 108 | 2.10E-18 |
| Glyur001109s00030207.1 | PF00400.27 | WD40 | 165 | 200 | 3.80E-05 |
| Glyur001109s00030207.1 | PF00400.27 | WD40 | 213 | 249 | 7.20E-07 |
| Glyur001109s00030207.1 | PF00400.27 | WD40 | 256 | 290 | 0.0035 |
| Glyur001109s00030207.1 | PF00400.27 | WD40 | 297 | 321 | 0.013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.041 |
| SRR1783600 | control | 4.983 |
| SRR1783602 | moderate drought stress | 3.500 |
| SRR1811619 | moderate drought stress | 3.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.701 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.344 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.313 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.655 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.633 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.939 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.295 |
| SRR2967015 | Control (Tissue:root) | 3.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.990 |
| SRR9715740 | Leave | 0.852 |
| SRR9715741 | Leave | 0.386 |
| SRR9715739 | Root | 0.957 |
| SRR9715742 | Root | 0.782 |
| SRR9715743 | Root | 1.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.572 |
| SRR8749028 | MeJA induced 9h | 9.160 |
| SRR8749029 | MeJA induced 9h | 11.541 |
| SRR8749030 | Uninduced | 1.047 |
| SRR8749031 | Uninduced | 0.733 |
| SRR8749032 | Uninduced | 1.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.203 |
| SRR8400027 | Control-Root | 2.022 |