Gene detail information of Glyur001110s00027597.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07640.2 | 3.00E-27 | Dof-type zinc finger DNA-binding family protein |
| NR | KEH20497.1 | 2.30E-100 | Dof domain zinc finger protein [Medicago truncatula] |
| Swissprot | tr|O82155|DOF17_ARATH | 3.00E-33 | Dof zinc finger protein DOF1.7 |
| trEMBL | tr|A0A072TSV2|A0A072TSV2_MEDTR | 9.00E-101 | Dof domain zinc finger protein {ECO:0000313|EMBL:KEH20497.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01110 | 22998 | 24098 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001110s00027597.1 | PF02701.10 | zf-Dof | 62 | 121 | 2.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.637 |
| SRR1783600 | control | 31.822 |
| SRR1783602 | moderate drought stress | 49.522 |
| SRR1811619 | moderate drought stress | 49.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.887 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.427 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.098 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.851 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.936 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.878 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.966 |
| SRR2967015 | Control (Tissue:root) | 20.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.719 |
| SRR9715740 | Leave | 1.768 |
| SRR9715741 | Leave | 1.827 |
| SRR9715739 | Root | 31.111 |
| SRR9715742 | Root | 52.001 |
| SRR9715743 | Root | 45.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.989 |
| SRR8400027 | Control-Root | 37.657 |