Gene detail information of Glyur001112s00036229.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41920.1 | 1.00E-149 | GRAS family transcription factor |
| NR | XP_004505671.1 | 0 | PREDICTED: scarecrow-like protein 23-like [Cicer arietinum] |
| Swissprot | tr|Q9FHZ1|SCL23_ARATH | 0 | Scarecrow-like protein 23 |
| trEMBL | tr|I3S9T4|I3S9T4_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37026.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01112 | 57794 | 59131 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001112s00036229.1 | PF03514.9 | GRAS | 77 | 436 | 2.40E-113 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.125 |
| SRR1783600 | control | 6.089 |
| SRR1783602 | moderate drought stress | 5.531 |
| SRR1811619 | moderate drought stress | 5.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.024 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.396 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.712 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.693 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.584 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.755 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.513 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.156 |
| SRR2967015 | Control (Tissue:root) | 11.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.061 |
| SRR9715740 | Leave | 7.289 |
| SRR9715741 | Leave | 5.942 |
| SRR9715739 | Root | 23.963 |
| SRR9715742 | Root | 12.275 |
| SRR9715743 | Root | 14.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.527 |
| SRR8749028 | MeJA induced 9h | 4.663 |
| SRR8749029 | MeJA induced 9h | 4.249 |
| SRR8749030 | Uninduced | 4.704 |
| SRR8749031 | Uninduced | 3.882 |
| SRR8749032 | Uninduced | 7.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.434 |
| SRR8400027 | Control-Root | 11.474 |