Gene detail information of Glyur001114s00030037.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G34590.10Transketolase family protein
NRXP_007147913.10hypothetical protein PHAVU_006G165600g [Phaseolus vulgaris]
COGNP_680995.13.00E-180pyruvate dehydrogenase E1 component beta subunit [Thermosynechococcus elongatus BP-1]
Swissprottr|O64688|ODPB3_ARATH0Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic (Precursor)
trEMBLtr|V7BPK8|V7BPK8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19907.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011141659419582+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00162PDHB, pdhB EC:1.2.4.1 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922
Central carbon metabolism in cancermap05230


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001114s00030037.1PF02779.19Transket_pyr1523229.40E-49
Glyur001114s00030037.1PF02780.15Transketolase_C3384566.00E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.106
SRR1783600control24.449
SRR1783602moderate drought stress10.126
SRR1811619moderate drought stress9.912

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.009
DRR006520Root Summer glycyrrhizin high producing strain11.907
DRR006521Root Winter glycyrrhizin high producing strain3.890
DRR006522Root Winter glycyrrhizin high producing strain3.732
DRR006523Root Summer glycyrrhizin low producing strain8.090
DRR006524Root Summer glycyrrhizin low producing strain8.175
DRR006525Leaf Summer glycyrrhizin high producing strain16.654
DRR006526Leaf Summer glycyrrhizin high producing strain16.876

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.794
SRR2868004Drought Stress(Tissue:root)21.121
SRR2967015Control (Tissue:root)22.689

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.307
SRR9715740Leave9.831
SRR9715741Leave12.630
SRR9715739Root26.612
SRR9715742Root15.849
SRR9715743Root18.368

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.630
SRR8749028MeJA induced 9h11.656
SRR8749029MeJA induced 9h12.125
SRR8749030Uninduced4.841
SRR8749031Uninduced2.484
SRR8749032Uninduced3.256

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.226
SRR8400027Control-Root42.870

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved