Gene detail information of Glyur001114s00030040.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G30090.13.00E-104Galactose oxidase/kelch repeat superfamily protein
NRXP_003542937.10PREDICTED: F-box/kelch-repeat protein At1g30090-like [Glycine max]
COGYP_004368597.11.00E-12Kelch repeat type 1-containing protein [Marinithermus hydrothermalis DSM 14884]
Swissprottr|Q9C6Z0|FBK17_ARATH3.00E-128F-box/kelch-repeat protein At1g30090
trEMBLtr|I1M1G3|I1M1G3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29040.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011142412627286+


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001114s00030040.1PF00646.28F-box27653.00E-07
Glyur001114s00030040.1PF01344.20Kelch_11291725.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.365
SRR1783600control6.886
SRR1783602moderate drought stress11.711
SRR1811619moderate drought stress11.456

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.491
DRR006520Root Summer glycyrrhizin high producing strain19.595
DRR006521Root Winter glycyrrhizin high producing strain15.118
DRR006522Root Winter glycyrrhizin high producing strain15.222
DRR006523Root Summer glycyrrhizin low producing strain28.571
DRR006524Root Summer glycyrrhizin low producing strain28.055
DRR006525Leaf Summer glycyrrhizin high producing strain8.874
DRR006526Leaf Summer glycyrrhizin high producing strain8.025

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.617
SRR2868004Drought Stress(Tissue:root)24.232
SRR2967015Control (Tissue:root)30.635

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave40.777
SRR9715740Leave36.562
SRR9715741Leave41.302
SRR9715739Root31.661
SRR9715742Root51.327
SRR9715743Root51.133

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.658
SRR8749028MeJA induced 9h28.275
SRR8749029MeJA induced 9h20.243
SRR8749030Uninduced30.672
SRR8749031Uninduced14.772
SRR8749032Uninduced14.244

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.342
SRR8400027Control-Root21.944

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved