Gene detail information of Glyur001114s00030044.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18340.1 | 6.00E-131 | Glycosyl hydrolase superfamily protein |
| NR | XP_004486020.1 | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Cicer arietinum] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 2.00E-118 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|I1MF29|I1MF29_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G10050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01114 | 58448 | 60100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001114s00030044.1 | PF00332.13 | Glyco_hydro_17 | 33 | 347 | 4.10E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.770 |
| SRR1783600 | control | 0.711 |
| SRR1783602 | moderate drought stress | 0.680 |
| SRR1811619 | moderate drought stress | 0.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.756 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.673 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.343 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.510 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.674 |
| SRR2967015 | Control (Tissue:root) | 1.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.861 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.072 |
| SRR9715739 | Root | 0.080 |
| SRR9715742 | Root | 0.361 |
| SRR9715743 | Root | 0.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.701 |
| SRR8749028 | MeJA induced 9h | 2.482 |
| SRR8749029 | MeJA induced 9h | 1.243 |
| SRR8749030 | Uninduced | 0.793 |
| SRR8749031 | Uninduced | 0.198 |
| SRR8749032 | Uninduced | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.908 |
| SRR8400027 | Control-Root | 0.660 |