Gene detail information of Glyur001115s00021445.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22760.1 | 0 | PHD finger family protein |
| NR | XP_004487539.1 | 0 | PREDICTED: uncharacterized protein LOC101491390 [Cicer arietinum] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 3.00E-09 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|K7MK01|K7MK01_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05400.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01115 | 33246 | 42419 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DDT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001115s00021445.1 | PF02791.12 | DDT | 214 | 270 | 2.10E-11 |
| Glyur001115s00021445.1 | PF15612.1 | WHIM1 | 327 | 361 | 0.00031 |
| Glyur001115s00021445.1 | PF00628.24 | PHD | 427 | 469 | 1.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.252 |
| SRR1783600 | control | 3.236 |
| SRR1783602 | moderate drought stress | 4.024 |
| SRR1811619 | moderate drought stress | 4.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.853 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.020 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.149 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.986 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.132 |
| SRR2967015 | Control (Tissue:root) | 7.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.714 |
| SRR9715740 | Leave | 5.184 |
| SRR9715741 | Leave | 4.566 |
| SRR9715739 | Root | 0.714 |
| SRR9715742 | Root | 5.964 |
| SRR9715743 | Root | 4.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.370 |
| SRR8749028 | MeJA induced 9h | 4.686 |
| SRR8749029 | MeJA induced 9h | 1.848 |
| SRR8749030 | Uninduced | 2.444 |
| SRR8749031 | Uninduced | 1.214 |
| SRR8749032 | Uninduced | 0.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.913 |
| SRR8400027 | Control-Root | 6.451 |