Gene detail information of Glyur001115s00021447.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22750.1 | 1.00E-62 | DNA/RNA helicase protein |
| NR | KEH38927.1 | 3.01E-77 | DNA/RNA helicase [Medicago truncatula] |
| Swissprot | tr|Q9FNI6|SM3L2_ARATH | 5.00E-68 | Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 |
| trEMBL | tr|A0A072VAY9|A0A072VAY9_MEDTR | 1.00E-77 | DNA/RNA helicase {ECO:0000313|EMBL:KEH38927.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01115 | 58650 | 70875 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001115s00021447.1 | PF13920.1 | zf-C3HC4_3 | 155 | 202 | 5.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.500 |
| SRR1783600 | control | 6.452 |
| SRR1783602 | moderate drought stress | 13.470 |
| SRR1811619 | moderate drought stress | 14.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.452 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.996 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.927 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.276 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.677 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.548 |
| SRR2967015 | Control (Tissue:root) | 13.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.997 |
| SRR9715740 | Leave | 0.288 |
| SRR9715741 | Leave | 1.223 |
| SRR9715739 | Root | 1.210 |
| SRR9715742 | Root | 7.273 |
| SRR9715743 | Root | 6.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.889 |
| SRR8749028 | MeJA induced 9h | 12.485 |
| SRR8749029 | MeJA induced 9h | 2.996 |
| SRR8749030 | Uninduced | 4.528 |
| SRR8749031 | Uninduced | 1.113 |
| SRR8749032 | Uninduced | 2.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.184 |
| SRR8400027 | Control-Root | 24.468 |