Gene detail information of Glyur001117s00026952.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34480.1 | 7.00E-178 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_003606895.1 | 0 | Glucan endo-1,3-beta-glucosidase [Medicago truncatula] |
| Swissprot | tr|Q9M069|E137_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 7 (Precursor) |
| trEMBL | tr|G7JG52|G7JG52_MEDTR | 0 | Glucan endo-1,3-beta-glucosidase-like protein {ECO:0000313|EMBL:AES89092.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01117 | 22614 | 26853 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001117s00026952.1 | PF00332.13 | Glyco_hydro_17 | 29 | 346 | 4.70E-92 |
| Glyur001117s00026952.1 | PF07983.8 | X8 | 373 | 445 | 5.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 94.098 |
| SRR1783600 | control | 94.037 |
| SRR1783602 | moderate drought stress | 49.235 |
| SRR1811619 | moderate drought stress | 50.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.819 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 46.703 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.964 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.191 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.254 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 52.562 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.259 |
| SRR2967015 | Control (Tissue:root) | 35.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.691 |
| SRR9715740 | Leave | 8.221 |
| SRR9715741 | Leave | 9.570 |
| SRR9715739 | Root | 35.337 |
| SRR9715742 | Root | 56.324 |
| SRR9715743 | Root | 52.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.725 |
| SRR8749028 | MeJA induced 9h | 7.536 |
| SRR8749029 | MeJA induced 9h | 6.959 |
| SRR8749030 | Uninduced | 2.270 |
| SRR8749031 | Uninduced | 1.082 |
| SRR8749032 | Uninduced | 3.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 57.788 |
| SRR8400027 | Control-Root | 66.493 |