Gene detail information of Glyur001117s00026953.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34460.1 | 9.00E-173 | GTP binding protein beta 1 |
| NR | XP_003537878.1 | 0 | PREDICTED: guanine nucleotide-binding protein subunit beta-1 [Glycine max] |
| COG | YP_004451364.1 | 4.00E-39 | WD40 repeat-containing protein [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|P93398|GBB2_TOBAC | 0 | Guanine nucleotide-binding protein subunit beta-2 |
| trEMBL | tr|I1LJE1|I1LJE1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G12600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01117 | 29083 | 33129 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 57 | 93 | 7.00E-09 |
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 150 | 185 | 7.40E-08 |
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 201 | 233 | 9.20E-07 |
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 241 | 276 | 1.20E-10 |
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 297 | 323 | 0.011 |
| Glyur001117s00026953.1 | PF00400.27 | WD40 | 338 | 368 | 3.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 62.952 |
| SRR1783600 | control | 62.267 |
| SRR1783602 | moderate drought stress | 54.080 |
| SRR1811619 | moderate drought stress | 53.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.219 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.325 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.782 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.268 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.547 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.784 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.988 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.369 |
| SRR2967015 | Control (Tissue:root) | 37.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.189 |
| SRR9715740 | Leave | 9.954 |
| SRR9715741 | Leave | 10.008 |
| SRR9715739 | Root | 57.685 |
| SRR9715742 | Root | 42.833 |
| SRR9715743 | Root | 43.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.902 |
| SRR8749028 | MeJA induced 9h | 13.359 |
| SRR8749029 | MeJA induced 9h | 19.924 |
| SRR8749030 | Uninduced | 3.468 |
| SRR8749031 | Uninduced | 0.948 |
| SRR8749032 | Uninduced | 2.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 52.366 |
| SRR8400027 | Control-Root | 61.699 |