Gene detail information of Glyur001117s00026961.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11750.16.00E-100CLP protease proteolytic subunit 6
NRXP_003537887.12.24E-177PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max]
COGYP_004103032.18.00E-54ATP-dependent Clp protease proteolytic subunit ClpP [Thermaerobacter marianensis DSM 12885]
Swissprottr|Q9SAA2|CLPP6_ARATH2.00E-139ATP-dependent Clp protease proteolytic subunit 6, chloroplastic (Precursor)
trEMBLtr|I1LJF6|I1LJF6_SOYBN8.00E-178ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011177469078759+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001117s00026961.1PF00574.18CLP_protease1232967.40E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.410
SRR1783600control30.563
SRR1783602moderate drought stress21.248
SRR1811619moderate drought stress21.540

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.308
DRR006520Root Summer glycyrrhizin high producing strain35.697
DRR006521Root Winter glycyrrhizin high producing strain33.746
DRR006522Root Winter glycyrrhizin high producing strain32.783
DRR006523Root Summer glycyrrhizin low producing strain47.924
DRR006524Root Summer glycyrrhizin low producing strain48.225
DRR006525Leaf Summer glycyrrhizin high producing strain79.950
DRR006526Leaf Summer glycyrrhizin high producing strain79.888

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.842
SRR2868004Drought Stress(Tissue:root)45.618
SRR2967015Control (Tissue:root)49.545

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave93.641
SRR9715740Leave105.900
SRR9715741Leave92.904
SRR9715739Root32.261
SRR9715742Root33.600
SRR9715743Root29.798

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.338
SRR8749028MeJA induced 9h31.218
SRR8749029MeJA induced 9h42.512
SRR8749030Uninduced19.664
SRR8749031Uninduced18.903
SRR8749032Uninduced19.356

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.624
SRR8400027Control-Root56.741

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved