Gene detail information of Glyur001117s00026962.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54160.15.00E-32nuclear factor Y, subunit A5
NRXP_004513462.14.81E-138PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum]
Swissprottr|Q9SYH4|NFYA5_ARATH5.00E-37Nuclear transcription factor Y subunit A-5
trEMBLtr|I3TAV3|I3TAV3_MEDTR2.00E-129Nuclear transcription factor Y subunit A3 {ECO:0000313|EMBL:AFK49645.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011178407189538+


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001117s00026962.1PF02045.10CBFB_NFYA761321.80E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control210.590
SRR1783600control202.538
SRR1783602moderate drought stress187.535
SRR1811619moderate drought stress194.160

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.210
DRR006520Root Summer glycyrrhizin high producing strain108.867
DRR006521Root Winter glycyrrhizin high producing strain111.539
DRR006522Root Winter glycyrrhizin high producing strain105.356
DRR006523Root Summer glycyrrhizin low producing strain67.909
DRR006524Root Summer glycyrrhizin low producing strain76.893
DRR006525Leaf Summer glycyrrhizin high producing strain17.580
DRR006526Leaf Summer glycyrrhizin high producing strain16.856

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.287
SRR2868004Drought Stress(Tissue:root)40.217
SRR2967015Control (Tissue:root)67.878

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.142
SRR9715740Leave47.869
SRR9715741Leave43.042
SRR9715739Root172.529
SRR9715742Root137.441
SRR9715743Root134.857

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.513
SRR8749028MeJA induced 9h2.962
SRR8749029MeJA induced 9h5.841
SRR8749030Uninduced9.276
SRR8749031Uninduced9.529
SRR8749032Uninduced13.965

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root153.914
SRR8400027Control-Root172.805

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved