Gene detail information of Glyur001118s00030854.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17240.1 | 5.00E-152 | SET domain group 40 |
| NR | XP_004490774.1 | 0 | PREDICTED: protein SET DOMAIN GROUP 40-like [Cicer arietinum] |
| Swissprot | tr|Q6NQJ8|SDG40_ARATH | 0 | Protein SET DOMAIN GROUP 40 |
| trEMBL | tr|V7B812|V7B812_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW13964.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01118 | 5261 | 9813 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001118s00030854.1 | PF00856.23 | SET | 56 | 298 | 2.10E-17 |
| Glyur001118s00030854.1 | PF09273.6 | Rubis-subs-bind | 338 | 469 | 1.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.693 |
| SRR1783600 | control | 11.031 |
| SRR1783602 | moderate drought stress | 17.790 |
| SRR1811619 | moderate drought stress | 17.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.442 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.027 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.782 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.334 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.705 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.984 |
| SRR2967015 | Control (Tissue:root) | 23.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.502 |
| SRR9715740 | Leave | 5.495 |
| SRR9715741 | Leave | 8.441 |
| SRR9715739 | Root | 1.128 |
| SRR9715742 | Root | 3.453 |
| SRR9715743 | Root | 4.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.096 |
| SRR8749028 | MeJA induced 9h | 7.886 |
| SRR8749029 | MeJA induced 9h | 6.818 |
| SRR8749030 | Uninduced | 6.358 |
| SRR8749031 | Uninduced | 3.738 |
| SRR8749032 | Uninduced | 4.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.466 |
| SRR8400027 | Control-Root | 24.193 |