Gene detail information of Glyur001118s00030855.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G17230.22.00E-153PHYTOENE SYNTHASE
NRKHN41025.10Phytoene synthase, chloroplastic [Glycine soja]
COGYP_007121895.11.00E-100phytoene/squalene synthetase [Microcoleus sp. PCC 7113]
Swissprottr|P49293|PSY_CUCME0Phytoene synthase, chloroplastic (Precursor)
trEMBLtr|K7KAF9|K7KAF9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G40720.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011181045221215+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02291crtB EC:2.5.1.32 2.5.1.99 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0016740  transferase activity

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001118s00030855.1PF00494.14SQS_PSY1454943.10E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.890
SRR1783600control0.696
SRR1783602moderate drought stress0.836
SRR1811619moderate drought stress0.893

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.463
DRR006520Root Summer glycyrrhizin high producing strain11.158
DRR006521Root Winter glycyrrhizin high producing strain3.835
DRR006522Root Winter glycyrrhizin high producing strain3.707
DRR006523Root Summer glycyrrhizin low producing strain28.089
DRR006524Root Summer glycyrrhizin low producing strain27.295
DRR006525Leaf Summer glycyrrhizin high producing strain38.728
DRR006526Leaf Summer glycyrrhizin high producing strain38.676

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.904
SRR2868004Drought Stress(Tissue:root)20.184
SRR2967015Control (Tissue:root)20.984

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave42.972
SRR9715740Leave31.076
SRR9715741Leave40.460
SRR9715739Root1.826
SRR9715742Root7.131
SRR9715743Root5.736

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.456
SRR8749028MeJA induced 9h5.811
SRR8749029MeJA induced 9h7.653
SRR8749030Uninduced7.382
SRR8749031Uninduced2.093
SRR8749032Uninduced2.821

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.209
SRR8400027Control-Root16.407

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved