Gene detail information of Glyur001120s00031696.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26850.1 | 1.00E-101 | F-box family protein |
| NR | XP_004513967.1 | 0 | PREDICTED: F-box protein At2g26850-like [Cicer arietinum] |
| Swissprot | tr|Q6NLB1|FB118_ARATH | 7.00E-130 | F-box protein At2g26850 |
| trEMBL | tr|I1NDX8|I1NDX8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G08260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01120 | 75429 | 79543 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001120s00031696.1 | PF00646.28 | F-box | 21 | 65 | 3.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.121 |
| SRR1783600 | control | 12.666 |
| SRR1783602 | moderate drought stress | 24.158 |
| SRR1811619 | moderate drought stress | 23.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.576 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.965 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.953 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.426 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.153 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.902 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.901 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.010 |
| SRR2967015 | Control (Tissue:root) | 19.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.686 |
| SRR9715740 | Leave | 5.984 |
| SRR9715741 | Leave | 15.010 |
| SRR9715739 | Root | 2.298 |
| SRR9715742 | Root | 7.322 |
| SRR9715743 | Root | 5.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.188 |
| SRR8749028 | MeJA induced 9h | 89.915 |
| SRR8749029 | MeJA induced 9h | 61.680 |
| SRR8749030 | Uninduced | 132.359 |
| SRR8749031 | Uninduced | 138.163 |
| SRR8749032 | Uninduced | 128.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.281 |
| SRR8400027 | Control-Root | 3.508 |