Gene detail information of Glyur001122s00030607.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06240.1 | 2.00E-13 | F-box family protein |
| NR | AET03236.2 | 1.36E-97 | F-box protein interaction domain protein [Medicago truncatula] |
| Swissprot | tr|Q8GXC7|FBK50_ARATH | 2.00E-20 | F-box/kelch-repeat protein At3g06240 |
| trEMBL | tr|G7LGY7|G7LGY7_MEDTR | 5.00E-98 | F-box protein interaction domain protein {ECO:0000313|EMBL:AET03236.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01122 | 12264 | 13547 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001122s00030607.1 | PF00646.28 | F-box | 15 | 52 | 1.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.208 |
| SRR1811619 | moderate drought stress | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.155 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.072 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.083 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.039 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.050 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.019 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.045 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.079 |
| SRR8400027 | Control-Root | 0.067 |