Gene detail information of Glyur001128s00028308.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07420.16.00E-171asparaginyl-tRNA synthetase 2
NRXP_006599143.10PREDICTED: asparagine--tRNA ligase, cytoplasmic 2-like isoform X2 [Glycine max]
COGYP_006282966.16.00E-101Asparaginyl-tRNA synthetase [Pectobacterium sp. SCC3193]
Swissprottr|Q9SW95|SYNC2_ARATH0Asparagine--tRNA ligase, cytoplasmic 2
trEMBLtr|I1MM63|I1MM63_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G09690.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011287439679482+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01893NARS, asnS EC:6.1.1.22 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001128s00028308.1PF00152.15tRNA-synt_22162771.70E-06
Glyur001128s00028308.1PF00152.15tRNA-synt_23576241.60E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.596
SRR1783600control2.712
SRR1783602moderate drought stress3.449
SRR1811619moderate drought stress3.516

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.711
DRR006520Root Summer glycyrrhizin high producing strain2.451
DRR006521Root Winter glycyrrhizin high producing strain0.389
DRR006522Root Winter glycyrrhizin high producing strain0.521
DRR006523Root Summer glycyrrhizin low producing strain8.789
DRR006524Root Summer glycyrrhizin low producing strain9.057
DRR006525Leaf Summer glycyrrhizin high producing strain6.552
DRR006526Leaf Summer glycyrrhizin high producing strain6.457

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.304
SRR2868004Drought Stress(Tissue:root)7.656
SRR2967015Control (Tissue:root)7.266

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.568
SRR9715740Leave15.497
SRR9715741Leave9.024
SRR9715739Root0.345
SRR9715742Root7.857
SRR9715743Root4.694

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.415
SRR8749028MeJA induced 9h1.476
SRR8749029MeJA induced 9h2.240
SRR8749030Uninduced3.594
SRR8749031Uninduced0.936
SRR8749032Uninduced0.949

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.242
SRR8400027Control-Root5.188

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved