Gene detail information of Glyur001128s00028312.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07420.1 | 2.00E-13 | asparaginyl-tRNA synthetase 2 |
| NR | AET01354.2 | 7.11E-44 | asparagine-tRNA ligase [Medicago truncatula] |
| Swissprot | tr|Q9SW95|SYNC2_ARATH | 2.00E-15 | Asparagine--tRNA ligase, cytoplasmic 2 |
| trEMBL | tr|G7LED0|G7LED0_MEDTR | 3.00E-44 | Asparagine-tRNA ligase {ECO:0000313|EMBL:AET01354.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01128 | 88251 | 88703 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01893 | NARS, asnS | EC:6.1.1.22 | Aminoacyl-tRNA biosynthesis | map00970 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.548 |
| SRR1783600 | control | 2.238 |
| SRR1783602 | moderate drought stress | 2.136 |
| SRR1811619 | moderate drought stress | 1.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.865 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.169 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.433 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.867 |
| SRR2967015 | Control (Tissue:root) | 4.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.176 |
| SRR9715740 | Leave | 2.179 |
| SRR9715741 | Leave | 0.913 |
| SRR9715739 | Root | 1.198 |
| SRR9715742 | Root | 2.388 |
| SRR9715743 | Root | 1.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.943 |
| SRR8749028 | MeJA induced 9h | 3.098 |
| SRR8749029 | MeJA induced 9h | 0.265 |
| SRR8749030 | Uninduced | 1.616 |
| SRR8749031 | Uninduced | 0.044 |
| SRR8749032 | Uninduced | 0.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.866 |
| SRR8400027 | Control-Root | 5.135 |