Gene detail information of Glyur001131s00029294.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29750.20receptor-like kinase in flowers 1
NRAET04342.20LRR receptor-like Serine/Threonine-kinase RFK1, putative [Medicago truncatula]
COGYP_004775215.19.00E-27RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprottr|Q9FXF2|RKF1_ARATH0Probable LRR receptor-like serine/threonine-protein kinase RFK1 (Precursor)
trEMBLtr|G7L7B9|G7L7B9_MEDTR0LRR receptor-like Serine/Threonine-kinase RFK1, putative {ECO:0000313|EMBL:AET04342.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011311193822090-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.7.1
Carbohydrate-Active enzymes FamilyCBM57


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001131s00029294.1PF00560.28LRR_11822040.5
Glyur001131s00029294.1PF00560.28LRR_13023190.71
Glyur001131s00029294.1PF11721.3Malectin4206089.70E-49
Glyur001131s00029294.1PF07714.12Pkinase_Tyr7128918.30E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.955
SRR1783600control6.960
SRR1783602moderate drought stress8.678
SRR1811619moderate drought stress8.556

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.904
DRR006520Root Summer glycyrrhizin high producing strain9.607
DRR006521Root Winter glycyrrhizin high producing strain83.559
DRR006522Root Winter glycyrrhizin high producing strain80.982
DRR006523Root Summer glycyrrhizin low producing strain21.908
DRR006524Root Summer glycyrrhizin low producing strain21.957
DRR006525Leaf Summer glycyrrhizin high producing strain12.578
DRR006526Leaf Summer glycyrrhizin high producing strain12.573

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.766
SRR2868004Drought Stress(Tissue:root)9.249
SRR2967015Control (Tissue:root)8.061

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.292
SRR9715740Leave10.779
SRR9715741Leave10.640
SRR9715739Root0.384
SRR9715742Root6.421
SRR9715743Root5.258

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.128
SRR8749028MeJA induced 9h109.830
SRR8749029MeJA induced 9h111.560
SRR8749030Uninduced62.838
SRR8749031Uninduced87.129
SRR8749032Uninduced65.732

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.742
SRR8400027Control-Root9.715

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved