Gene detail information of Glyur001131s00029302.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18880.1 | 7.00E-91 | heat shock transcription factor A4A |
| NR | AGJ83756.1 | 0 | heat stress transcription factor A-4a-like protein [Caragana korshinskii] |
| Swissprot | tr|O49403|HFA4A_ARATH | 2.00E-120 | Heat stress transcription factor A-4a |
| trEMBL | tr|R9R6C4|R9R6C4_9FABA | 0 | Heat stress transcription factor A-4a-like protein {ECO:0000313|EMBL:AGJ83756.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01131 | 65426 | 68067 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001131s00029302.1 | PF00447.12 | HSF_DNA-bind | 14 | 105 | 1.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.749 |
| SRR1783600 | control | 4.786 |
| SRR1783602 | moderate drought stress | 6.363 |
| SRR1811619 | moderate drought stress | 6.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.507 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.598 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.995 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.577 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 33.864 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.915 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.981 |
| SRR2967015 | Control (Tissue:root) | 24.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.619 |
| SRR9715740 | Leave | 24.840 |
| SRR9715741 | Leave | 28.429 |
| SRR9715739 | Root | 5.442 |
| SRR9715742 | Root | 31.148 |
| SRR9715743 | Root | 25.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.447 |
| SRR8749028 | MeJA induced 9h | 35.386 |
| SRR8749029 | MeJA induced 9h | 42.644 |
| SRR8749030 | Uninduced | 48.015 |
| SRR8749031 | Uninduced | 57.763 |
| SRR8749032 | Uninduced | 41.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.532 |
| SRR8400027 | Control-Root | 18.358 |