Gene detail information of Glyur001132s00025468.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10830.1 | 1.00E-141 | 15-cis-zeta-carotene isomerase |
| NR | XP_003601746.1 | 0 | hypothetical protein MTR_3g084950 [Medicago truncatula] |
| COG | YP_007054308.1 | 5.00E-98 | hypothetical protein Riv7116_1190 [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q9SAC0|ZCIS_ARATH | 2.00E-175 | 15-cis-zeta-carotene isomerase, chloroplastic (Precursor) |
| trEMBL | tr|B7FL73|B7FL73_MEDTR | 0 | 15-cis-zeta-carotene isomerase {ECO:0000313|EMBL:AES71997.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01132 | 5486 | 10255 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15744 | Z-ISO | EC:5.2.1.12 | Carotenoid biosynthesis | map00906 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001132s00025468.1 | PF07298.6 | NnrU | 237 | 456 | 1.30E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.703 |
| SRR1783600 | control | 4.257 |
| SRR1783602 | moderate drought stress | 3.053 |
| SRR1811619 | moderate drought stress | 3.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.787 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.451 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.781 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.101 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.584 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.838 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.550 |
| SRR2967015 | Control (Tissue:root) | 5.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.008 |
| SRR9715740 | Leave | 33.956 |
| SRR9715741 | Leave | 15.731 |
| SRR9715739 | Root | 12.053 |
| SRR9715742 | Root | 6.004 |
| SRR9715743 | Root | 8.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.320 |
| SRR8749028 | MeJA induced 9h | 3.638 |
| SRR8749029 | MeJA induced 9h | 2.834 |
| SRR8749030 | Uninduced | 4.031 |
| SRR8749031 | Uninduced | 0.558 |
| SRR8749032 | Uninduced | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.488 |
| SRR8400027 | Control-Root | 7.866 |