Gene detail information of Glyur001132s00025477.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14210.10phytoene desaturase 3
NRXP_006601863.10PREDICTED: phytoene dehydrogenase, chloroplastic/chromoplastic isoform X1 [Glycine max]
COGYP_007108688.10zeta-carotene desaturase, three-step phytoene desaturase [Geitlerinema sp. PCC 7407]
Swissprottr|P28553|CRTI_SOYBN0Phytoene dehydrogenase, chloroplastic/chromoplastic (Precursor)
trEMBLtr|I1MYC3|I1MYC3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00720.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011323604543723-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02293PDS, crtP EC:1.3.5.5 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0016117  carotenoid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016705  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001132s00025477.1PF01593.19Amino_oxidase1695991.90E-85


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.062
SRR1783600control18.252
SRR1783602moderate drought stress16.103
SRR1811619moderate drought stress16.014

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.717
DRR006520Root Summer glycyrrhizin high producing strain16.914
DRR006521Root Winter glycyrrhizin high producing strain18.076
DRR006522Root Winter glycyrrhizin high producing strain17.356
DRR006523Root Summer glycyrrhizin low producing strain20.157
DRR006524Root Summer glycyrrhizin low producing strain20.315
DRR006525Leaf Summer glycyrrhizin high producing strain41.250
DRR006526Leaf Summer glycyrrhizin high producing strain41.114

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)78.380
SRR2868004Drought Stress(Tissue:root)106.983
SRR2967015Control (Tissue:root)95.522

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.695
SRR9715740Leave78.101
SRR9715741Leave79.425
SRR9715739Root10.560
SRR9715742Root19.046
SRR9715743Root15.930

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.174
SRR8749028MeJA induced 9h33.714
SRR8749029MeJA induced 9h14.942
SRR8749030Uninduced24.439
SRR8749031Uninduced15.651
SRR8749032Uninduced11.744

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.743
SRR8400027Control-Root42.106

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved