Gene detail information of Glyur001132s00025478.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G32000.10DNA topoisomerase, type IA, core
NRXP_010926666.10PREDICTED: DNA topoisomerase 3-beta isoform X2 [Elaeis guineensis]
COGYP_003726445.13.00E-25DNA topoisomerase [Methanohalobium evestigatum Z-7303]
Swissprottr|F4ISQ7|TOP3B_ARATH0DNA topoisomerase 3-beta
trEMBLtr|G7JBC7|G7JBC7_MEDTR0DNA topoisomerase {ECO:0000256|RuleBase:RU000518}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011324668664101-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03165TOP3 EC:5.99.1.2 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006265  DNA topological change


molecular_function

GO:0003677  DNA binding

GO:0003916  DNA topoisomerase activity

GO:0003917  DNA topoisomerase type I activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001132s00025478.1PF01131.15Topoisom_bac3834442.50E-08
Glyur001132s00025478.1PF01131.15Topoisom_bac4466217.70E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.576
SRR1783600control9.584
SRR1783602moderate drought stress13.367
SRR1811619moderate drought stress13.538

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.781
DRR006520Root Summer glycyrrhizin high producing strain10.356
DRR006521Root Winter glycyrrhizin high producing strain11.550
DRR006522Root Winter glycyrrhizin high producing strain11.473
DRR006523Root Summer glycyrrhizin low producing strain11.513
DRR006524Root Summer glycyrrhizin low producing strain11.059
DRR006525Leaf Summer glycyrrhizin high producing strain8.747
DRR006526Leaf Summer glycyrrhizin high producing strain8.588

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.503
SRR2868004Drought Stress(Tissue:root)16.224
SRR2967015Control (Tissue:root)17.135

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.518
SRR9715740Leave10.128
SRR9715741Leave9.613
SRR9715739Root3.483
SRR9715742Root7.338
SRR9715743Root6.608

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.296
SRR8749028MeJA induced 9h13.748
SRR8749029MeJA induced 9h8.232
SRR8749030Uninduced3.756
SRR8749031Uninduced1.302
SRR8749032Uninduced1.700

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.869
SRR8400027Control-Root16.969

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved