Gene detail information of Glyur001132s00025483.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12240.1 | 6.00E-113 | zinc finger (C2H2 type) family protein |
| NR | XP_004492151.1 | 0 | PREDICTED: uncharacterized protein LOC101511516 isoform X1 [Cicer arietinum] |
| trEMBL | tr|K7LRY3|K7LRY3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36770.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01132 | 85860 | 88670 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001132s00025483.1 | PF01936.13 | NYN | 219 | 302 | 2.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.582 |
| SRR1783600 | control | 3.667 |
| SRR1783602 | moderate drought stress | 5.523 |
| SRR1811619 | moderate drought stress | 5.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.944 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.865 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.306 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.947 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.079 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.967 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.873 |
| SRR2967015 | Control (Tissue:root) | 8.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.144 |
| SRR9715740 | Leave | 6.143 |
| SRR9715741 | Leave | 5.932 |
| SRR9715739 | Root | 1.548 |
| SRR9715742 | Root | 5.359 |
| SRR9715743 | Root | 4.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.187 |
| SRR8749028 | MeJA induced 9h | 7.146 |
| SRR8749029 | MeJA induced 9h | 4.043 |
| SRR8749030 | Uninduced | 11.970 |
| SRR8749031 | Uninduced | 5.393 |
| SRR8749032 | Uninduced | 5.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.699 |
| SRR8400027 | Control-Root | 8.778 |