Gene detail information of Glyur001133s00027776.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55770.5 | 3.00E-87 | GATA type zinc finger transcription factor family protein |
| NR | XP_004503222.1 | 4.68E-128 | PREDICTED: pollen-specific protein SF3-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9M047|WLI2B_ARATH | 9.00E-109 | LIM domain-containing protein WLIM2b {ECO:0000305} |
| trEMBL | tr|T2DNC9|T2DNC9_PHAVU | 2.00E-128 | Uncharacterized protein {ECO:0000313|EMBL:ESW35498.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01133 | 37891 | 42580 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001133s00027776.1 | PF00412.17 | LIM | 49 | 86 | 4.20E-09 |
| Glyur001133s00027776.1 | PF00412.17 | LIM | 125 | 180 | 5.10E-14 |
| Glyur001133s00027776.1 | PF00412.17 | LIM | 223 | 278 | 2.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.916 |
| SRR1783600 | control | 56.629 |
| SRR1783602 | moderate drought stress | 49.664 |
| SRR1811619 | moderate drought stress | 50.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.089 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.779 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.666 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 42.491 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.421 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.970 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 99.992 |
| SRR2868004 | Drought Stress(Tissue:root) | 70.852 |
| SRR2967015 | Control (Tissue:root) | 70.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.660 |
| SRR9715740 | Leave | 22.779 |
| SRR9715741 | Leave | 13.547 |
| SRR9715739 | Root | 45.114 |
| SRR9715742 | Root | 41.204 |
| SRR9715743 | Root | 36.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.773 |
| SRR8749028 | MeJA induced 9h | 43.463 |
| SRR8749029 | MeJA induced 9h | 31.025 |
| SRR8749030 | Uninduced | 22.645 |
| SRR8749031 | Uninduced | 9.636 |
| SRR8749032 | Uninduced | 13.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 79.975 |
| SRR8400027 | Control-Root | 79.774 |