Gene detail information of Glyur001133s00027786.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11280.2 | 5.00E-65 | Duplicated homeodomain-like superfamily protein |
| NR | KHN17851.1 | 4.69E-106 | Transcription factor MYB1R1 [Glycine soja] |
| Swissprot | tr|Q8S9H7|DIV_ANTMA | 4.00E-70 | Transcription factor DIVARICATA |
| trEMBL | tr|V7B7D4|V7B7D4_PHAVU | 5.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:ESW13792.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01133 | 71416 | 72698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001133s00027786.1 | PF00249.26 | Myb_DNA-binding | 127 | 171 | 3.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.732 |
| SRR1783600 | control | 1.798 |
| SRR1783602 | moderate drought stress | 2.356 |
| SRR1811619 | moderate drought stress | 2.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.126 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.223 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.622 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.572 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.085 |
| SRR2967015 | Control (Tissue:root) | 3.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.240 |
| SRR9715740 | Leave | 0.141 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.292 |
| SRR9715742 | Root | 0.565 |
| SRR9715743 | Root | 1.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.069 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.641 |
| SRR8400027 | Control-Root | 0.741 |