Gene detail information of Glyur001135s00033671.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G16850.10telomerase reverse transcriptase
NRXP_007148874.10hypothetical protein PHAVU_005G021500g [Phaseolus vulgaris]
Swissprottr|Q9SPU7|TERT_ARATH0Telomerase reverse transcriptase
trEMBLtr|V7BV12|V7BV12_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW20868.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011352860740572-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11126TERT, EST2 EC:2.7.7.49 HTLV-I infection map05166


Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003721  telomerase RNA reverse transcriptase activity

GO:0003964  RNA-directed DNA polymerase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001135s00033671.1PF12009.3Telomerase_RBD4966521.20E-35
Glyur001135s00033671.1PF00078.22RVT_178110008.20E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.475
SRR1783600control1.586
SRR1783602moderate drought stress2.382
SRR1811619moderate drought stress2.317

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.451
DRR006520Root Summer glycyrrhizin high producing strain0.436
DRR006521Root Winter glycyrrhizin high producing strain0.274
DRR006522Root Winter glycyrrhizin high producing strain0.176
DRR006523Root Summer glycyrrhizin low producing strain0.900
DRR006524Root Summer glycyrrhizin low producing strain0.797
DRR006525Leaf Summer glycyrrhizin high producing strain0.339
DRR006526Leaf Summer glycyrrhizin high producing strain0.362

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.273
SRR2868004Drought Stress(Tissue:root)2.901
SRR2967015Control (Tissue:root)2.577

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.543
SRR9715740Leave0.854
SRR9715741Leave4.289
SRR9715739Root0.066
SRR9715742Root2.703
SRR9715743Root2.062

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.566
SRR8749028MeJA induced 9h7.704
SRR8749029MeJA induced 9h2.635
SRR8749030Uninduced1.436
SRR8749031Uninduced0.646
SRR8749032Uninduced0.454

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.969
SRR8400027Control-Root4.682

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved