Gene detail information of Glyur001137s00022770.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G18620.29.00E-100chromatin remodeling factor17
NRXP_007225408.12.63E-126hypothetical protein PRUPE_ppa000594mg [Prunus persica]
Swissprottr|Q8RWY3|ISW2_ARATH5.00E-111Putative chromatin-remodeling complex ATPase chain
trEMBLtr|M5XKJ4|M5XKJ4_PRUPE1.00E-126Uncharacterized protein {ECO:0000313|EMBL:EMJ26607.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0113749107572+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006338  chromatin remodeling

GO:0043044  ATP-dependent chromatin remodeling


cellular_component

GO:0005634  nucleus

GO:0016589  NURF complex


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

GO:0016887  ATPase activity

GO:0031491  nucleosome binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001137s00022770.1PF09111.5SLIDE1712531.20E-25
Glyur001137s00022770.1PF00176.18SNF2_N2473247.60E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.267
SRR1783600control17.670
SRR1783602moderate drought stress67.956
SRR1811619moderate drought stress68.768

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.798
DRR006520Root Summer glycyrrhizin high producing strain21.752
DRR006521Root Winter glycyrrhizin high producing strain50.490
DRR006522Root Winter glycyrrhizin high producing strain49.823
DRR006523Root Summer glycyrrhizin low producing strain33.954
DRR006524Root Summer glycyrrhizin low producing strain34.313
DRR006525Leaf Summer glycyrrhizin high producing strain24.093
DRR006526Leaf Summer glycyrrhizin high producing strain22.999

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.495
SRR2868004Drought Stress(Tissue:root)51.999
SRR2967015Control (Tissue:root)43.619

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.086
SRR9715740Leave17.011
SRR9715741Leave26.775
SRR9715739Root1.034
SRR9715742Root4.816
SRR9715743Root3.817

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h49.298
SRR8749028MeJA induced 9h128.725
SRR8749029MeJA induced 9h57.728
SRR8749030Uninduced135.927
SRR8749031Uninduced71.001
SRR8749032Uninduced64.750

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.457
SRR8400027Control-Root47.326

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved