Gene detail information of Glyur001137s00022778.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G07900.18.00E-33Mitochondrial transcription termination factor family protein
NRXP_003593962.15.56E-73hypothetical protein MTR_2g019810 [Medicago truncatula]
trEMBLtr|G7IPZ5|G7IPZ5_MEDTR2.00E-73Transcription termination factor family protein {ECO:0000313|EMBL:AES64213.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011373574337965-


Gene family

Gene familysubfamily
Transcription Factors FamilymTERF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005739  mitochondrion


molecular_function

GO:0003690  double-stranded DNA binding

GO:0033926  glycopeptide alpha-N-acetylgalactosaminidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001137s00022778.1PF02536.9mTERF371644.40E-12
Glyur001137s00022778.1PF12899.2Glyco_hydro_1001662098.60E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.953
SRR1783600control0.943
SRR1783602moderate drought stress0.890
SRR1811619moderate drought stress0.909

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.763
DRR006520Root Summer glycyrrhizin high producing strain0.867
DRR006521Root Winter glycyrrhizin high producing strain1.256
DRR006522Root Winter glycyrrhizin high producing strain0.932
DRR006523Root Summer glycyrrhizin low producing strain1.919
DRR006524Root Summer glycyrrhizin low producing strain1.778
DRR006525Leaf Summer glycyrrhizin high producing strain0.231
DRR006526Leaf Summer glycyrrhizin high producing strain0.159

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.798
SRR2868004Drought Stress(Tissue:root)1.462
SRR2967015Control (Tissue:root)1.297

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.124
SRR9715740Leave0.085
SRR9715741Leave0.050
SRR9715739Root0.068
SRR9715742Root0.199
SRR9715743Root0.121

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.127
SRR8749028MeJA induced 9h0.313
SRR8749029MeJA induced 9h0.373
SRR8749030Uninduced0.424
SRR8749031Uninduced0.164
SRR8749032Uninduced1.051

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.071
SRR8400027Control-Root1.197

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved