Gene detail information of Glyur001137s00022779.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07900.1 | 3.00E-31 | Mitochondrial transcription termination factor family protein |
| NR | XP_003593962.1 | 9.72E-104 | hypothetical protein MTR_2g019810 [Medicago truncatula] |
| trEMBL | tr|G7IPZ5|G7IPZ5_MEDTR | 4.00E-104 | Transcription termination factor family protein {ECO:0000313|EMBL:AES64213.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01137 | 45751 | 49058 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | mTERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001137s00022779.1 | PF02536.9 | mTERF | 153 | 221 | 2.20E-10 |
| Glyur001137s00022779.1 | PF02536.9 | mTERF | 285 | 379 | 1.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.098 |
| SRR1783600 | control | 5.537 |
| SRR1783602 | moderate drought stress | 7.647 |
| SRR1811619 | moderate drought stress | 6.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.662 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.122 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.640 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.818 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.798 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.108 |
| SRR2967015 | Control (Tissue:root) | 7.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.636 |
| SRR9715740 | Leave | 4.470 |
| SRR9715741 | Leave | 2.700 |
| SRR9715739 | Root | 5.727 |
| SRR9715742 | Root | 5.744 |
| SRR9715743 | Root | 4.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.357 |
| SRR8749028 | MeJA induced 9h | 8.281 |
| SRR8749029 | MeJA induced 9h | 4.755 |
| SRR8749030 | Uninduced | 2.953 |
| SRR8749031 | Uninduced | 1.415 |
| SRR8749032 | Uninduced | 2.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.199 |
| SRR8400027 | Control-Root | 6.026 |