Gene detail information of Glyur001137s00022783.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06410.11.00E-105Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004486037.10PREDICTED: zinc finger CCCH domain-containing protein 34-like [Cicer arietinum]
Swissprottr|Q84W91|C3H32_ARATH4.00E-141Zinc finger CCCH domain-containing protein 32
trEMBLtr|G7IPY9|G7IPY9_MEDTR0Zinc finger C-x8-C-x5-C-x3-H type protein {ECO:0000313|EMBL:AES64207.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011377141076614-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001137s00022783.1PF00642.19zf-CCCH49744.00E-09
Glyur001137s00022783.1PF00642.19zf-CCCH951191.20E-08
Glyur001137s00022783.1PF00642.19zf-CCCH1401653.30E-09
Glyur001137s00022783.1PF00642.19zf-CCCH3533777.50E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.814
SRR1783600control18.842
SRR1783602moderate drought stress16.257
SRR1811619moderate drought stress16.008

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.326
DRR006520Root Summer glycyrrhizin high producing strain13.070
DRR006521Root Winter glycyrrhizin high producing strain7.154
DRR006522Root Winter glycyrrhizin high producing strain7.022
DRR006523Root Summer glycyrrhizin low producing strain12.145
DRR006524Root Summer glycyrrhizin low producing strain11.994
DRR006525Leaf Summer glycyrrhizin high producing strain12.790
DRR006526Leaf Summer glycyrrhizin high producing strain12.687

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.939
SRR2868004Drought Stress(Tissue:root)6.142
SRR2967015Control (Tissue:root)7.601

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.064
SRR9715740Leave6.170
SRR9715741Leave6.758
SRR9715739Root9.957
SRR9715742Root12.397
SRR9715743Root12.221

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.967
SRR8749028MeJA induced 9h14.814
SRR8749029MeJA induced 9h9.382
SRR8749030Uninduced5.271
SRR8749031Uninduced2.220
SRR8749032Uninduced3.518

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.801
SRR8400027Control-Root13.710

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved