Gene detail information of Glyur001147s00028995.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52660.2 | 6.00E-80 | Homeodomain-like superfamily protein |
| NR | KHM99331.1 | 1.59E-143 | Transcription factor ASG4 [Glycine soja] |
| Swissprot | tr|Q8H0W3|RVE6_ARATH | 9.00E-98 | Protein REVEILLE 6 |
| trEMBL | tr|I1N3U7|I1N3U7_SOYBN | 9.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G47230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01147 | 9356 | 13987 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001147s00028995.1 | PF00249.26 | Myb_DNA-binding | 38 | 82 | 8.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.216 |
| SRR1783600 | control | 18.015 |
| SRR1783602 | moderate drought stress | 23.859 |
| SRR1811619 | moderate drought stress | 23.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.268 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.552 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.969 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.806 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.093 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.566 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.532 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.275 |
| SRR2967015 | Control (Tissue:root) | 8.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.501 |
| SRR9715740 | Leave | 19.879 |
| SRR9715741 | Leave | 9.817 |
| SRR9715739 | Root | 2.117 |
| SRR9715742 | Root | 4.525 |
| SRR9715743 | Root | 3.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.162 |
| SRR8749028 | MeJA induced 9h | 37.368 |
| SRR8749029 | MeJA induced 9h | 23.488 |
| SRR8749030 | Uninduced | 6.801 |
| SRR8749031 | Uninduced | 20.438 |
| SRR8749032 | Uninduced | 19.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.288 |
| SRR8400027 | Control-Root | 10.558 |