Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur001147s00028999.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01320.1	3.00E-151	Peptidase family M48 family protein
NR	XP_003624056.1	0	CAAX prenyl protease-like protein [Medicago truncatula]
COG	YP_004165518.1	3.00E-51	ste24 endopeptidase [Cellulophaga algicola DSM 14237]
Swissprot	tr\|Q8RX88\|FACE1_ARATH	0	CAAX prenyl protease 1 homolog
trEMBL	tr\|G7L6L7\|G7L6L7_MEDTR	0	CAAX prenyl protease-like protein {ECO:0000313\|EMBL:AES80274.1}

Sequence

Transcript Sequence

>Glyur001147s00028999.1
GAGTAATCGGTGATTTCTCACTCTCTTCGTTTCCTTGCTGTTGCTCTGCTGCGACTGCGTCACCCTCAGCCATGGCGTTTCCCTACATGGAAGCTGTTGTCGGGTTTATGATATTAATGTACATTTTTGAAACTTACTTGGATGTGCGACAACACCGGGCCCTCAAACTTCCCACTCTTCCAAAGGCTTTACATGGGGTTATCAGCCAAGAGAAATTTGAGAAATCTAGAGCCTATAGTCTTGATAAAAGCCACTTCCATTTTGTTCATGAATTTGTGACAATAGTGACAGACTCTACAATTTTGTACTTTAGAGTATTGCCCTGGTTTTGGAAGAAATCAGGAGATTTTGTGACATTAGCTGGTCTCAATGCAGAAAATGAAATACTGCATACCCTTGCCTTTTTAGCTGGTTTGATGATCTGGTCACAGATAACGGATTTGCCTTTTTCTCTGTACTCCACTTTTGTGATTGAGTCCCGTCATGGTTTCAATAAGCAAACACCATGGTTATTCTTTAGGGACATGATAAAAGGAATTTGCCTTTCTGTGATAATTGGCCCTCCTATTGTGGCTGCAATCATTGTAATAGTACAGAAAGGAGGTCCNTACTTGGCCATCTATCTTTGGGCGTTTATGTTTGGTCTTTCTCTTGTGATGCTGACTCTTTATCCAGTTCTAATAGCTCCACTCTTCAATAAGTTCACTCCAGCCTATATGTATGGATTCTTCAAGAACAAGAGGATTGTGCTTTATGACACATTGGTTCAACAGTGCAAAAACGATGAGGAAATTGTTGCTGTTATTGCCCATGAGCTGGGACACTGGAAGCTCAACCACACTGTGTACACATTCATTGCTATGCAGCATACTGTAATCCCACTCCAGCAACTAGTCAGCTTTGGTCTGAACCTTGTGAGCAGATCATTTGAATTTCAGGCTGATGGCTTTGCTAAGAAGCTTGGATATGCATCTGCCCTCCGAGCTGGTCTCGTGAAACTACAGGAGGAGAATCTGTCAGCTATGAATACAGATCCATGGTTCTCTGCTTATCACTATTCTCACCCTCCCCTTGTTGAAAGATTGGCCGCACTNGACAAATCAGATAAGTCAGACTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01147	36437	43680	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06013	STE24	EC:3.4.24.84	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0071586 CAAX-box protein processing

cellular_component GO:0016020 membrane molecular_function GO:0004222 metalloendopeptidase activity GO:0008233 peptidase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001147s00028999.1	PF01435.13	Peptidase_M48	214	266	2.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.030
SRR1783600	control	57.120
SRR1783602	moderate drought stress	41.862
SRR1811619	moderate drought stress	41.239

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	53.019
DRR006520	Root Summer glycyrrhizin high producing strain	53.951
DRR006521	Root Winter glycyrrhizin high producing strain	72.265
DRR006522	Root Winter glycyrrhizin high producing strain	71.085
DRR006523	Root Summer glycyrrhizin low producing strain	47.759
DRR006524	Root Summer glycyrrhizin low producing strain	45.618
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.004
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.621

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	91.989
SRR2868004	Drought Stress(Tissue:root)	87.437
SRR2967015	Control (Tissue:root)	80.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	40.265
SRR9715740	Leave	54.566
SRR9715741	Leave	44.611
SRR9715739	Root	28.763
SRR9715742	Root	43.205
SRR9715743	Root	40.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.306
SRR8749028	MeJA induced 9h	45.405
SRR8749029	MeJA induced 9h	48.511
SRR8749030	Uninduced	53.186
SRR8749031	Uninduced	39.798
SRR8749032	Uninduced	37.117

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	72.222
SRR8400027	Control-Root	64.282