Gene detail information of Glyur001147s00029004.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61490.30Pectin lyase-like superfamily protein
NRXP_004492778.10PREDICTED: probable polygalacturonase-like [Cicer arietinum]
COGYP_001179193.13.00E-65galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|A7PZL3|PGLR_VITVI0Probable polygalacturonase
trEMBLtr|V7B4K6|V7B4K6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW11793.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011477946483284-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004650  polygalacturonase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001147s00029004.1PF00295.12Glyco_hydro_281984798.30E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control224.575
SRR1783600control226.358
SRR1783602moderate drought stress118.974
SRR1811619moderate drought stress118.387

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain97.866
DRR006520Root Summer glycyrrhizin high producing strain96.983
DRR006521Root Winter glycyrrhizin high producing strain3.072
DRR006522Root Winter glycyrrhizin high producing strain3.126
DRR006523Root Summer glycyrrhizin low producing strain102.345
DRR006524Root Summer glycyrrhizin low producing strain102.444
DRR006525Leaf Summer glycyrrhizin high producing strain9.836
DRR006526Leaf Summer glycyrrhizin high producing strain9.884

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)72.669
SRR2868004Drought Stress(Tissue:root)101.899
SRR2967015Control (Tissue:root)67.781

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.861
SRR9715740Leave2.394
SRR9715741Leave4.556
SRR9715739Root88.538
SRR9715742Root74.215
SRR9715743Root72.806

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.835
SRR8749028MeJA induced 9h2.140
SRR8749029MeJA induced 9h1.726
SRR8749030Uninduced0.643
SRR8749031Uninduced0.315
SRR8749032Uninduced0.421

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root579.993
SRR8400027Control-Root383.030

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved