Gene detail information of Glyur001149s00024735.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05990.2 | 1.00E-84 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004505719.1 | 0 | PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Cicer arietinum] |
| COG | YP_004652861.1 | 2.00E-112 | enoyl-ACP reductase [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q9SLA8|FABI_ARATH | 1.00E-161 | Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic (Precursor) |
| trEMBL | tr|I3SAH2|I3SAH2_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK37264.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01149 | 37853 | 43156 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00208 | fabI | EC:1.3.1.9 1.3.1.10 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 | |||
| Biotin metabolism | map00780 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001149s00024735.1 | PF13561.1 | adh_short_C2 | 242 | 323 | 5.40E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 63.582 |
| SRR1783600 | control | 63.925 |
| SRR1783602 | moderate drought stress | 56.990 |
| SRR1811619 | moderate drought stress | 56.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.393 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.483 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.375 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 105.310 |
| SRR2868004 | Drought Stress(Tissue:root) | 52.641 |
| SRR2967015 | Control (Tissue:root) | 49.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 24.678 |
| SRR9715740 | Leave | 17.817 |
| SRR9715741 | Leave | 21.849 |
| SRR9715739 | Root | 39.429 |
| SRR9715742 | Root | 38.417 |
| SRR9715743 | Root | 37.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.912 |
| SRR8749028 | MeJA induced 9h | 33.953 |
| SRR8749029 | MeJA induced 9h | 68.979 |
| SRR8749030 | Uninduced | 8.017 |
| SRR8749031 | Uninduced | 3.282 |
| SRR8749032 | Uninduced | 7.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 103.596 |
| SRR8400027 | Control-Root | 98.478 |