Gene detail information of Glyur001150s00037550.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 3.00E-64 | O-methyltransferase 1 |
| NR | KEH40861.1 | 2.23E-167 | caffeic acid O-methyltransferase [Medicago truncatula] |
| COG | YP_007063273.1 | 3.00E-24 | hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|P93324|CHOMT_MEDSA | 3.00E-102 | Isoliquiritigenin 2'-O-methyltransferase |
| trEMBL | tr|A0A072VH15|A0A072VH15_MEDTR | 8.00E-168 | Caffeic acid O-methyltransferase {ECO:0000313|EMBL:KEH40861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01150 | 40453 | 42520 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001150s00037550.1 | PF08100.6 | Dimerisation | 68 | 117 | 3.40E-14 |
| Glyur001150s00037550.1 | PF00891.13 | Methyltransf_2 | 166 | 326 | 2.30E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.207 |
| SRR1783600 | control | 8.748 |
| SRR1783602 | moderate drought stress | 9.060 |
| SRR1811619 | moderate drought stress | 8.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.050 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.559 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.363 |
| SRR2967015 | Control (Tissue:root) | 4.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.457 |
| SRR9715740 | Leave | 27.403 |
| SRR9715741 | Leave | 11.586 |
| SRR9715739 | Root | 0.786 |
| SRR9715742 | Root | 2.949 |
| SRR9715743 | Root | 4.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.180 |
| SRR8749031 | Uninduced | 0.072 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.952 |
| SRR8400027 | Control-Root | 11.725 |