Gene detail

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Gene detail information of Glyur001155s00025128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63930.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003590907.1	0	Pentatricopeptide repeat-containing protein [Medicago truncatula]
COG	YP_004775215.1	5.00E-61	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LVP0\|Y5639_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g63930 (Precursor)
trEMBL	tr\|G7I651\|G7I651_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES61158.2}

Sequence

Transcript Sequence

>Glyur001155s00025128.1
ATGGTGATGATGCAGATGGAGAGGAATGCATCTGCNCTGTTTGTGGTATTTACTCTTTCATCTACTCTTTTTGTGTATCTATCTGAAGGGCTCAATGCAGAGGGTAAATACCTTCTGGACATAAAAGGGAGACTGTTTGACAGATACAACCGTCTACACAACTGGAACACCAATGATTCCACACCTTGTGGTTGGAAGNGTGTCACCTGCAGCAACACTGGCATCAATCCAGTGGTGGAGTCTCTTGATTTGCATGCAATGAATCTCTCAGGGTCTTTGTCTCCCAGCATTGGTGGCTTGGTTCACTTGCATCACCTTAATCTGTCTCAAAACACTTTATCTGGGATCATACCCAGGGAAATTGGAAACTGTTCCAGTTTGCAGATCCTTGGTCTCAACAATAATCATTTTGAAGGCCCAATTCCTGTTGAAATAGGTAGGCTTTCAAGTTTAACAGAGTTGTATCTTTACAGTAACCAACTCTCTGGGCCTTTTCCAGAGGAAATTGGCAACCTTTCCTCACTCTCAATACTCGTTGCATACACCAATAATCTCAGTGGATCCTTGCCACCTTCCATTGGGAAGCTTAAAAGATTGAGACGCTTNCGAGCTGGGCAGAATATGATATCAGGAAGTCTACCCCAAGAGATTGGTGGGTGCGAGAGCTTGGAGTATCTTGGTTTAACTCAAAACCAGATAACTGGTGAAATACCAAAATCACTTGGGCTGGTCAAGAAATTACAATACTTGGTCCTTAGGGAAAACAATCTTCTTGGGGCTATACCAAAAGAGCTTGGAAACTGTACAAATTTGGAGGTTCTTGCTCTCTATCAGAACAATCTTGTGGGAGCAATTCCCATGGAGCTGGGAAACCTTGCACTCCTGAAAAGGTTGTACCTTTACAGGAATGAGTTGACAGGAAATATTCCAAGGGAGATTGGGAACCTGTCTCTTGCAATAGAGATTGATTTCTCAGAGAACCTGCTGACTGGAGAGATACCAATTGAGTTGGTTAGAATAAAGGGATTACAATTGCTTCATCTCTTCCAGAACAAGCTAACTGGTGTGATCCCACAAGAGCTCACCACATTGAAAAACCTCACCGAGCTGGACCTCTCTATTAACTACCTCNGAGGTGCTATTCCTATTGGATTTCAGAACTCGACAAATTTGATCTCCCTGCAGCTCTTCANCAACTCATTAGGTGGTACAATTCCCCGTGCACTGGGAGCAAATAGTCCTCTCTGGGTGCTTGATTTGTCATTCAACNACTTCGTGGGAAGGATTCCAACCCATCTTTGCCAACAAACTAACTTGATACTGCTGAACTTAGGATCAAATAAACTCATTGGAAGNATCCCTTATGGTATTACAAGCTGCAGGTCCTTGGTGTATCTTCGCCTCTTCGGTAACAACCTCAGGGGAAGGTTTCCTTCCAATCTATGCAANCTTGAAAACCTTTCTGCAGTGGAGTTGGATCAGAACGACTTCACCGGCACTATTCCCCCTCAAATTGGTAACTGCAGAAATCTGCAAAGACTTCACCTTTCCAACAACCACTTTNTGTCTGAATTGCCTAAAGAAATTGGTAACCTCTCACAGTTGGTCATCTTCAATGTCTCATCAAATCNTCTTTTTGGTAGAGTGCCTGCGGAACTGTTCAACTGCAGGAAGCTGCAACGACTTGATCTCAGCCACAACAGCTTCNTAGGTGCTTTACCAGGTGAGATTGGAACTCTCTTACAGTTGGAGCTTCTCAGGCTCTCACATAATAATTTTTCTGGGAATGTTCCAGTGGCAGTGGGAAAACTCTTGCGATTGACTGAGCTACAAATGAGTGGAAACTCATTCTGTGGTAGCATTCCACATGAGTTGGGCCCTTTACCCTTTTTACCTCTCTTACAAAACTCCACACTCAGCTGCTTTTCAGGAAACAAAGGGCTATGTGGAGGACAACTTGGCCCTTGTCAAAATTCAGCTTCACCCTCCCCTCCAAATAGACTAGGGAAAGTTCTGGTTATAGCTGCAGCTGTTGTTAGTGGGGTTTCATTGGTTTTAGTCCTAGTCATTATACATCTCATGATGAGAACTCCCATGGACTCTATTGTGCCCCAGCAAGATATAGATAATACACCACATGTTTCACCACACATGTACTTCTTCCCAAAGGAGGAGCTAACTTTCCAAGACATGGTTGAAGCTACTGAAAATTTTCACTCCAAATATGTAATAGGAAAAGGTGGGAGTGGAACTGTGTACAGAGCAGATATATCAACTGGTCACACAATTGCTATAAAGAAGTTGACATCAAGCAGTCACACTCACAGAATCGATTTAAATGGCTGCTTCCGTGCTGAAATCTTGACTCTGGGGAAGATAAGGCATCGGAACATTGTGAAATTGTATGGCTTCTGTAACTACCATGGCTCAAGTATGCTACTTTATGAGTACATGGAAAAGGGTAGTTTGGGGGAGTTACTTCATCATGGGGGGTCCTCCTCTGTTCTTGATTGGCATGCTCGGTTTAGGATTGCTCTTGGAACTGCACAAGGGCTCTCTTATTTGCACCATGATTGCAAGCCTAGGATCATCCACCGTGACATAAAGTCCAATAACATTCTTATTGACCATGAACTTGAGGCTCATGTTGGGGATTTTGGATTAGCAAAGCTAACCGATAATAATATGTCACGGTCTAAATCAGTGTCTGCAGTTGTAGGCTCTTACGGTTACATAGCCCCTGAGTATGCATACACAATGAAAGTGACGGAAAAATGTGATGTGTACAGTTATGGGGTTGTCCTTTTGGAGTTACTGACTGGGAAGAAGCCAATACAATCGTTGGATCAAGGTGGNGGTGATCTTGTAACATGGGTGAGAAATCATGTTCACAAATATTCGTTGTCACTGGACAATTTCCTTGATGCTCGATTGGAATTGGACCTACTAGATGAAACAGATGTGGCTCAAATTCTTGATGTCTTGAAAATTGCTCTACTCTGCACCGACACGTCTCCTTCTAGACGCCCAAGTATGCGTAAGGTTGTGTCAATGCTTACAAGCTCTAGCAAACGCAAAGAGCAATCCTCCTTCTCCCCATGTCAAGAGTCAAATTAA

Protein Sequence

>Glyur001155s00025128.1
MVMMQMERNASALFVVFTLSSTLFVYLSEGLNAEGKYLLDIKGRLFDRYNRLHNWNTNDSTPCGWKXVTCSNTGINPVVESLDLHAMNLSGSLSPSIGGLVHLHHLNLSQNTLSGIIPREIGNCSSLQILGLNNNHFEGPIPVEIGRLSSLTELYLYSNQLSGPFPEEIGNLSSLSILVAYTNNLSGSLPPSIGKLKRLRRXRAGQNMISGSLPQEIGGCESLEYLGLTQNQITGEIPKSLGLVKKLQYLVLRENNLLGAIPKELGNCTNLEVLALYQNNLVGAIPMELGNLALLKRLYLYRNELTGNIPREIGNLSLAIEIDFSENLLTGEIPIELVRIKGLQLLHLFQNKLTGVIPQELTTLKNLTELDLSINYLXGAIPIGFQNSTNLISLQLFXNSLGGTIPRALGANSPLWVLDLSFNXFVGRIPTHLCQQTNLILLNLGSNKLIGXIPYGITSCRSLVYLRLFGNNLRGRFPSNLCXLENLSAVELDQNDFTGTIPPQIGNCRNLQRLHLSNNHFXSELPKEIGNLSQLVIFNVSSNXLFGRVPAELFNCRKLQRLDLSHNSFXGALPGEIGTLLQLELLRLSHNNFSGNVPVAVGKLLRLTELQMSGNSFCGSIPHELGPLPFLPLLQNSTLSCFSGNKGLCGGQLGPCQNSASPSPPNRLGKVLVIAAAVVSGVSLVLVLVIIHLMMRTPMDSIVPQQDIDNTPHVSPHMYFFPKEELTFQDMVEATENFHSKYVIGKGGSGTVYRADISTGHTIAIKKLTSSSHTHRIDLNGCFRAEILTLGKIRHRNIVKLYGFCNYHGSSMLLYEYMEKGSLGELLHHGGSSSVLDWHARFRIALGTAQGLSYLHHDCKPRIIHRDIKSNNILIDHELEAHVGDFGLAKLTDNNMSRSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPIQSLDQGGGDLVTWVRNHVHKYSLSLDNFLDARLELDLLDETDVAQILDVLKIALLCTDTSPSRRPSMRKVVSMLTSSSKRKEQSSFSPCQESN

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01155	4206	7611	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001155s00025128.1	PF08263.7	LRRNT_2	32	71	3.40E-07
Glyur001155s00025128.1	PF00560.28	LRR_1	102	124	1.1
Glyur001155s00025128.1	PF00560.28	LRR_1	150	172	1
Glyur001155s00025128.1	PF13516.1	LRR_6	220	242	1.1
Glyur001155s00025128.1	PF00560.28	LRR_1	510	532	0.073
Glyur001155s00025128.1	PF00560.28	LRR_1	558	578	0.69
Glyur001155s00025128.1	PF00560.28	LRR_1	606	626	1.3
Glyur001155s00025128.1	PF00069.20	Pkinase	741	1016	4.70E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.656
SRR1783600	control	0.679
SRR1783602	moderate drought stress	0.698
SRR1811619	moderate drought stress	0.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.571
DRR006520	Root Summer glycyrrhizin high producing strain	0.571
DRR006521	Root Winter glycyrrhizin high producing strain	0.314
DRR006522	Root Winter glycyrrhizin high producing strain	0.290
DRR006523	Root Summer glycyrrhizin low producing strain	1.571
DRR006524	Root Summer glycyrrhizin low producing strain	1.601
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.324

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.956
SRR2868004	Drought Stress(Tissue:root)	3.398
SRR2967015	Control (Tissue:root)	1.395

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.174
SRR9715740	Leave	0.171
SRR9715741	Leave	0.063
SRR9715739	Root	0.336
SRR9715742	Root	0.929
SRR9715743	Root	0.949

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.233
SRR8749028	MeJA induced 9h	1.430
SRR8749029	MeJA induced 9h	1.703
SRR8749030	Uninduced	0.624
SRR8749031	Uninduced	0.646
SRR8749032	Uninduced	0.513

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.138
SRR8400027	Control-Root	0.656