Gene detail information of Glyur001155s00025136.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G02250.13.00E-64phloem protein 2-B2
NRCBI39533.31.69E-158unnamed protein product [Vitis vinifera]
Swissprottr|Q9ZVR5|PP2B2_ARATH5.00E-73Putative F-box protein PP2-B2
trEMBLtr|C6T4B4|C6T4B4_SOYBN2.00E-132Putative uncharacterized protein {ECO:0000313|EMBL:ACU16524.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold011554446253022+


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001155s00025136.1PF00646.28F-box15580.00026
Glyur001155s00025136.1PF14299.1PP2982599.90E-44
Glyur001155s00025136.1PF00646.28F-box2953383.20E-05
Glyur001155s00025136.1PF14299.1PP23875439.20E-50
Glyur001155s00025136.1PF00646.28F-box5485914.20E-05
Glyur001155s00025136.1PF14299.1PP26398092.10E-58


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.256
SRR1783600control26.193
SRR1783602moderate drought stress30.161
SRR1811619moderate drought stress29.874

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.569
DRR006520Root Summer glycyrrhizin high producing strain52.140
DRR006521Root Winter glycyrrhizin high producing strain44.801
DRR006522Root Winter glycyrrhizin high producing strain43.891
DRR006523Root Summer glycyrrhizin low producing strain65.293
DRR006524Root Summer glycyrrhizin low producing strain63.532
DRR006525Leaf Summer glycyrrhizin high producing strain25.922
DRR006526Leaf Summer glycyrrhizin high producing strain25.043

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.556
SRR2868004Drought Stress(Tissue:root)27.922
SRR2967015Control (Tissue:root)40.034

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.913
SRR9715740Leave36.658
SRR9715741Leave53.006
SRR9715739Root52.317
SRR9715742Root73.921
SRR9715743Root63.737

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h190.456
SRR8749028MeJA induced 9h132.231
SRR8749029MeJA induced 9h242.913
SRR8749030Uninduced65.035
SRR8749031Uninduced104.554
SRR8749032Uninduced136.195

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.088
SRR8400027Control-Root23.470

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved