Gene detail information of Glyur001158s00022948.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62360.1 | 4.00E-98 | KNOX/ELK homeobox transcription factor |
| NR | XP_007153990.1 | 1.21E-169 | hypothetical protein PHAVU_003G081800g [Phaseolus vulgaris] |
| Swissprot | tr|P46608|HSBH1_SOYBN | 2.00E-152 | Homeobox protein SBH1 |
| trEMBL | tr|V7C761|V7C761_PHAVU | 5.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:ESW25984.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01158 | 12290 | 17644 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001158s00022948.1 | PF03790.8 | KNOX1 | 140 | 180 | 3.10E-22 |
| Glyur001158s00022948.1 | PF03791.8 | KNOX2 | 190 | 238 | 5.00E-23 |
| Glyur001158s00022948.1 | PF03789.8 | ELK | 273 | 294 | 3.60E-11 |
| Glyur001158s00022948.1 | PF05920.6 | Homeobox_KN | 313 | 352 | 8.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.862 |
| SRR1783600 | control | 42.722 |
| SRR1783602 | moderate drought stress | 60.141 |
| SRR1811619 | moderate drought stress | 59.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 121.614 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 120.860 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 107.264 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 103.384 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.524 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.313 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.559 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.884 |
| SRR2967015 | Control (Tissue:root) | 12.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.026 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 22.789 |
| SRR9715742 | Root | 24.299 |
| SRR9715743 | Root | 21.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 57.289 |
| SRR8400027 | Control-Root | 73.975 |