Gene detail information of Glyur001158s00022950.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62330.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004507662.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 1.00E-65 | Uncharacterized protein At1g04910 |
| trEMBL | tr|V7C720|V7C720_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW25982.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01158 | 27262 | 31285 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001158s00022950.1 | PF10250.4 | O-FucT | 181 | 543 | 2.40E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.785 |
| SRR1783600 | control | 5.825 |
| SRR1783602 | moderate drought stress | 5.230 |
| SRR1811619 | moderate drought stress | 5.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.941 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.725 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.916 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.792 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.398 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.536 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.862 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.890 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.085 |
| SRR2967015 | Control (Tissue:root) | 10.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.897 |
| SRR9715740 | Leave | 7.513 |
| SRR9715741 | Leave | 7.428 |
| SRR9715739 | Root | 2.282 |
| SRR9715742 | Root | 4.415 |
| SRR9715743 | Root | 5.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.650 |
| SRR8749028 | MeJA induced 9h | 4.963 |
| SRR8749029 | MeJA induced 9h | 4.898 |
| SRR8749030 | Uninduced | 3.378 |
| SRR8749031 | Uninduced | 1.440 |
| SRR8749032 | Uninduced | 1.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.826 |
| SRR8400027 | Control-Root | 11.509 |