Gene detail

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Gene detail information of Glyur001158s00022955.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04350.1	0	tRNA synthetase class I (I, L, M and V) family protein
NR	AES92665.2	0	leucyl-tRNA synthetase [Medicago truncatula]
COG	YP_003289957.1	0	leucyl-tRNA synthetase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|P93736\|SYV_ARATH	1.00E-19	Valine--tRNA ligase
trEMBL	tr\|G7JJA8\|G7JJA8_MEDTR	0	Leucyl-tRNA synthetase {ECO:0000313\|EMBL:AES92665.2}

Sequence

Transcript Sequence

>Glyur001158s00022955.2
CATCTTCACTAGTCAGCACGTTATCCCCTTTCTCTCTCCACTGCTCTTTCTTGCTTCCTCTCACACTCTCAAAATCCAAATGCTGCACTCTCATCTCCATCTNCATCTTCATCTCAACATCCACTTTCCCTCCCCACACTCCCCTGCACCAGCACCACTCCCCTTCCCTTCCTCTAANACTAAGACCCTCAGAAAATGTTCTCCTGCTCTCAGATTCCGCAGTTATGGTCGTGGCAGCATCATCACCAGGAACTCGGCGACGAATGGCGAAGCGAACGCAACGGAGCAACAGAAGAATCCTTCGCAGAAGCAAGTGGTCAATAGAGCTTACCCTTTCCACGAAATTGAGCCCAAGTGGCAGCGTTTTTGGGACCAACATCGTACATTCCGAACCCCCGATGACGACATCGACACATCGAAACCCAAATATTACGTTCTCGACATGTTCCCTTACCCCAGNGGAGCTGGGCTGCATGTTGGTCATCCACTTGGATACACTGCCACCGACATTCTCGCTAGGTATAAACGGATGCAGGGATATAACGTCTTGCATCCAATGGGTTGGGATGCTTTTGGATTGCCCGCAGAACAATATGCTATTGAGACAGGAACTCACCCAAAGCTTACCACGGCTGAAGTTCCAGTTAATTGGTGCCCTGCACTTGGCACGGTGTTGGCCAATGAGGAGGTTGTTGATGGTGTGAGTGAACGTGGTGGTCATCCTGTAGTAAGAAAGCCAATGAGGCAATGGATGCTCAAGATTACTGCATATGCTGACCGTCTTCTGGAGGATTTAGATGACCTTGACTGGCCTGAAAGTGTAAAAGAAATGCAGAGAAATTGGATAGGGAGGTCAGAAGGGGCTGAGTTGGAATTCTGCATACTTGATAGTGATGGAAAGGAGAGANACATAAAGATTATTGTGTATACCACGAGGCCTGATACAATCTTTGGAGCAACTTACTTAGTTGTGGCACCAGAGCATTCCTTGCTGTCATCATTGGTTTCCACTGCCCAGAGCAAACATGTGGAGGATTATATTGACCTTGCCACAAGGAAGAGTGACCTTGAGAGGACCGAGCTTCAGAAGGAAAAGACTGGAGTTTTTACTGGTTGTTATGCAAAAAATCCAGCAAATGGGGAAGCCATNCCAATATGGGTGGCAGATTATGTTTTGGGGAGCTATGGNACAGGAGCAATCATGGCTGTGCCTGCACATGATTCTCGTGATTATGAATTTGCTTTGAAATATGATGTTCCGATTCGCTGGGTTGTGATGCCAGATGATAAAAATCTCAATGAGTCTGGAAAGGCTTTTCCAGGTGAAGGCATTATTGTAAATTCATCAAATACATTGGTGGGGCTTGACATTAATGGCTTGTCTAGCAAAGAGGCTTCTCTAAAAGTCATCGATTGGGCGGAGAAAAGTGGAAATGGAAAGAGAAAGGTGAACTACAAGTTAAGGGACTGGCTGTTTGCTCGGCAACGTTACTGGGGCGAACCTATCCCTGTCATCTTCTTGGATGACAGTGGCGAGACTGTCCCACTGTGTGAGACTGAATTGCCCCTTCTTCTACCTGAATTGGATGACTTTTCTCCCAAGGGAACAGGGGAGCCTCCTCTGTCTAAGGCAGTGTCCTGGGTGAAGACTGCAGATAGTTCATCCGGAAGACCAGCTACAAGGGAAACAAATACCATGCCACAGTGGGCTGGTTCATGCTGGTACTATTTGAGATTTATGGACCCAAATAATTCAAAAGAATTGGTTGATAAAACAAAAGAAAGGTATTGGGGCCCTGTCGATGTGTATGTTGGNGGTGCCGAGCATGCAGTTCTCCATTTACTTTATGCTAGATTCTGGCACAAGGTCCTCTTTGACATTGGTGTTGTATCCACCAAGGAGCCCTTCCAATGTGTCATAAACCAAGGGATTATTCTCGGGGAGGTTCAATACATGGCTTGTAGAGATCAAGATGGAAATCTGATATCTGCTGATTCTACNGATATGTTGAATGAACATAATCTAGAAAGAATTCCTGAGGAAAAGGTCATGAAATCTCNGGATTCTTTTGTCTTGAAAGAAAATCCTGACATACGTTTAGTTGCCCGCGCTCACAAAATGAGTAAAAGTAGGGGAAATGTTGTTAATCCTGATGATGTTGTTTCTGAGTATGGTGCAGATTCTCTTCGTTTATATGAAATGTTCATGGGACCATTGAGAGACTCAAAACAATGGAGTACTAGTGGCATTGAAGGTGTACATCGGTTTTTAGGAAGAACTTGGAGGCTGATTGTTGGCTCACCTTTGTCTGATGGCACATTTAAGGATAGAACTGTATCAGTTGACGAGGAGCCTACTATAGAACAACTTCGTTGTCTTCATAAATGTATTTCTAAGGTAACAGAGGAAATTGAGGGCACACGGTTCAACACTGGAATTTCTGCAATGATGGAATTCCTTAATGCAGCATATAAGTGGGATAAACATCCAAGATCAGTTGTTGAGGCTTTTGTTTTGCTGCTTTCACCATATGCGCCACACATGGCTGAGGAGCTATGGTCTCGGCTAGGGCACACAAAATCATTAGCCTACGAACCTTTTCCTAAGGCAAATCCTGCTTACCTGAAGGATTCCACGATAGTCCTCCCAGTTCAGATTAATGGCAAGACAAGAGGTACCATCCAGGTTGAAGAAACATGTACAGAGGAGGATGCTTTTGCATTAGCATATATGGATGAAAAGCTATCCAAGTATTTGCATGGTCAATCTGTCAGGAAAAGAATTTATGTTCCTGGTAAGATTTTGAATGTTGTTCTTGACCGTAAAAACATCAAGGCTGGTGTACAGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01158	58378	67962	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01869	LARS, leuS	EC:6.1.1.4	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006429 leucyl-tRNA aminoacylation

molecular_function GO:0000166 nucleotide binding GO:0002161 aminoacyl-tRNA editing activity GO:0004812 aminoacyl-tRNA ligase activity GO:0004823 leucine-tRNA ligase activity GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001158s00022955.2	PF00133.17	tRNA-synt_1	93	171	6.50E-13
Glyur001158s00022955.2	PF13603.1	tRNA-synt_1_2	253	447	1.80E-60
Glyur001158s00022955.2	PF00133.17	tRNA-synt_1	460	621	6.00E-05
Glyur001158s00022955.2	PF00133.17	tRNA-synt_1	679	706	3.00E-07
Glyur001158s00022955.2	PF08264.8	Anticodon_1	764	871	3.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.952
SRR1783600	control	3.043
SRR1783602	moderate drought stress	2.639
SRR1811619	moderate drought stress	2.549

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.441
DRR006520	Root Summer glycyrrhizin high producing strain	5.354
DRR006521	Root Winter glycyrrhizin high producing strain	3.369
DRR006522	Root Winter glycyrrhizin high producing strain	3.254
DRR006523	Root Summer glycyrrhizin low producing strain	7.300
DRR006524	Root Summer glycyrrhizin low producing strain	6.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.291
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.583

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.823
SRR2868004	Drought Stress(Tissue:root)	7.659
SRR2967015	Control (Tissue:root)	10.078

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	17.942
SRR9715740	Leave	26.310
SRR9715741	Leave	15.969
SRR9715739	Root	0.921
SRR9715742	Root	2.342
SRR9715743	Root	2.255

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.626
SRR8749028	MeJA induced 9h	9.072
SRR8749029	MeJA induced 9h	4.908
SRR8749030	Uninduced	2.849
SRR8749031	Uninduced	2.095
SRR8749032	Uninduced	1.882

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	8.275
SRR8400027	Control-Root	8.991